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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1548910 |
| Transcript ID | Lj5g3v1548910.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: squamosa promoter-binding-like protein 1-like [Glycine max] gi|356499594|ref|XP_003518623.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 956 | 956 | – | – | |
| PANTHER | 1 | 228 | 228 | 0 | – | |
| PANTHER | 1 | 228 | 228 | 0 | – | |
| MobiDBLite | 69 | 89 | 21 | – | – | |
| Gene3D | 141 | 210 | 70 | 1.40E-32 | ||
| ProSiteProfiles | 146 | 223 | 78 | 31.812 | ||
| SUPERFAMILY | 147 | 227 | 81 | 1.70E-36 | ||
| Pfam | 149 | 222 | 74 | 8.40E-28 | ||
| MobiDBLite | 213 | 236 | 24 | – | – | |
| MobiDBLite | 402 | 450 | 49 | – | – | |
| PANTHER | 430 | 494 | 65 | 0 | – | |
| PANTHER | 430 | 494 | 65 | 0 | – | |
| PANTHER | 582 | 1003 | 422 | 0 | – | |
| PANTHER | 582 | 1003 | 422 | 0 | – | |
| SUPERFAMILY | 776 | 892 | 117 | 1.20E-07 | ||
| CDD | 780 | 891 | 112 | 1.48E-06 | – | |
| Gene3D | 780 | 894 | 115 | 3.50E-07 | ||
| Phobius | 957 | 980 | 24 | – | – | |
| TMHMM | 961 | 980 | 20 | – | – | |
| Phobius | 981 | 1003 | 23 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of Lj5g3v1548910.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1548910.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.