Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj5g3v1602450.1

Overview

Field Value
Gene ID Lj5g3v1602450
Transcript ID Lj5g3v1602450.1
Lotus japonicus genome version MG20 v3.0
Description transcription factor AP2-EREBP [Lotus japonicus] gi|193237577|dbj|BAG50065.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
19 73 55 – –
PANTHER
PTHR31190
21 317 297 2.00E-81 –
PANTHER
PTHR31190:SF27
21 317 297 2.00E-81 –
SMART
SM00380
73 136 64 2.70E-39
IPR001471
Gene3D
G3DSA:3.30.730.10
73 131 59 3.30E-32
IPR001471
ProSiteProfiles
PS51032
73 130 58 23.775
IPR001471
SUPERFAMILY
SSF54171
73 131 59 2.55E-22
IPR016177
CDD
cd00018
74 131 58 5.40E-33
IPR001471
Pfam
PF00847
74 122 49 6.60E-12
IPR001471
PRINTS
PR00367
74 85 12 8.40E-12
IPR001471
PRINTS
PR00367
96 112 17 8.40E-12
IPR001471
MobiDBLite
mobidb-lite
205 224 20 – –
Coils
Coil
246 284 39 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj5g3v1602450.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1602450.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.