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Lj5g3v1695660.1

Overview

Field Value
Gene ID Lj5g3v1695660
Transcript ID Lj5g3v1695660.1
Lotus japonicus genome version MG20 v3.0
Description protein binding protein [Arabidopsis lyrata subsp]. lyrata] gi|297813999|ref|XP_002874883.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10044:SF98
31 58 28 9.50E-154 –
PANTHER
PTHR10044
31 58 28 9.50E-154 –
PANTHER
PTHR10044:SF98
76 239 164 9.50E-154 –
PANTHER
PTHR10044
76 239 164 9.50E-154 –
MobiDBLite
mobidb-lite
252 274 23 – –
PANTHER
PTHR10044
335 826 492 9.50E-154 –
PANTHER
PTHR10044:SF98
335 826 492 9.50E-154 –
MobiDBLite
mobidb-lite
377 399 23 – –
Coils
Coil
504 566 63 – –
Coils
Coil
609 643 35 – –
Coils
Coil
665 685 21 – –
Coils
Coil
687 721 35 – –
MobiDBLite
mobidb-lite
733 762 30 – –
Gene3D
G3DSA:3.30.40.10
763 820 58 5.40E-08
IPR013083
Pfam
PF13920
771 819 49 1.90E-11 –
CDD
cd00162
773 817 45 8.05E-06 –
SUPERFAMILY
SSF57850
773 820 48 1.06E-06 –
ProSiteProfiles
PS50089
774 814 41 9.819
IPR001841

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 19

Expression data

Expression pattern

Expression pattern of Lj5g3v1695660.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1695660.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.