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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1697410 |
| Transcript ID | Lj5g3v1697410.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like [Vitis vinifera] gi|359487017|ref|XP_002263912.2| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 55 | 55 | – | – | |
| Coils | 10 | 30 | 21 | – | – | |
| Gene3D | 61 | 190 | 130 | 5.90E-24 | ||
| SUPERFAMILY | 64 | 198 | 135 | 1.16E-38 | ||
| ProSiteProfiles | 65 | 189 | 125 | 36.372 | ||
| CDD | 66 | 189 | 124 | 6.05E-36 | – | |
| SMART | 67 | 170 | 104 | 7.20E-21 | ||
| Pfam | 72 | 190 | 119 | 3.70E-16 | ||
| PANTHER | 201 | 540 | 340 | 3.20E-127 | – | |
| PANTHER | 201 | 540 | 340 | 3.20E-127 | – | |
| SUPERFAMILY | 204 | 559 | 356 | 1.49E-93 | – | |
| CDD | 207 | 535 | 329 | 5.64E-161 | – | |
| Pfam | 209 | 530 | 322 | 6.40E-44 | ||
| ProSiteProfiles | 209 | 533 | 325 | 39.388 | ||
| ProSitePatterns | 210 | 225 | 16 | – | ||
| Gene3D | 322 | 394 | 73 | 1.20E-28 | – | |
| Coils | 542 | 573 | 32 | – | – | |
| Pfam | 634 | 886 | 253 | 3.50E-70 | ||
| Pfam | 896 | 1105 | 210 | 1.00E-54 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. | ||
| Molecular function | Thiol-dependent ubiquitinyl hydrolase activity | Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. |
Expression pattern of Lj5g3v1697410.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1697410.1, powered by CORGI.
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