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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR029346
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 20 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.088s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0261909.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like [Cucumis sativus] gi|449516157|ref|XP_004165114.1| chr0 135716702 135722997 -
2 domain predictions
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Lj0g3v0261909.3
n.a. Ubiquitin-specific protease 12 isoform 1 [Theobroma cacao] gi|508727471|gb|EOY19368.1| chr0 135717856 135722804 -
2 domain predictions
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Lj2g3v2905020.1
n.a. CM0545.290.nc [Lotus japonicus] gi|164605535|dbj|BAF98601.1| chr2 38020719 38035844 -
2 domain predictions
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Lj5g3v1697410.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like [Vitis vinifera] gi|359487017|ref|XP_002263912.2| chr5 24261319 24282548 -
2 domain predictions
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Lj6g3v1038860.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like isoform X2 [Cicer arietinum] gi|502134175|ref|XP_004502026.1| chr6 11661004 11690874 +
2 domain predictions
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Lj6g3v1055600.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like [Glycine max] gi|356574869|ref|XP_003555566.1| chr6 12101473 12118395 +
2 domain predictions
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LotjaGi1g1v0061200.1
n.a. Ubiquitin carboxyl-terminal hydrolase-like protein; TAIR: AT5G06600.1 ubiquitin-specific protease 12; Swiss-Prot: sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12; TrEMBL-Plants: tr|B0BLB2|B0BLB2_LOTJA CM0545.290.nc protein; Found in the gene: LotjaGi1g1v0061200 LjG1.1_chr1 8563607 8579364 +
2 domain predictions
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LotjaGi1g1v0061200.2
n.a. Ubiquitin carboxyl-terminal hydrolase-like protein; TAIR: AT5G06600.1 ubiquitin-specific protease 12; Swiss-Prot: sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12; TrEMBL-Plants: tr|B0BLB2|B0BLB2_LOTJA CM0545.290.nc protein; Found in the gene: LotjaGi1g1v0061200 LjG1.1_chr1 8564188 8578405 +
2 domain predictions
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LotjaGi1g1v0061200.3
n.a. Ubiquitin carboxyl-terminal hydrolase-like protein; TAIR: AT5G06600.1 ubiquitin-specific protease 12; Swiss-Prot: sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12; TrEMBL-Plants: tr|B0BLB2|B0BLB2_LOTJA CM0545.290.nc protein; Found in the gene: LotjaGi1g1v0061200 LjG1.1_chr1 8564191 8578405 +
2 domain predictions
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LotjaGi1g1v0061200.4
n.a. Ubiquitin carboxyl-terminal hydrolase-like protein; TAIR: AT5G06600.1 ubiquitin-specific protease 12; Swiss-Prot: sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12; TrEMBL-Plants: tr|B0BLB2|B0BLB2_LOTJA CM0545.290.nc protein; Found in the gene: LotjaGi1g1v0061200 LjG1.1_chr1 8564191 8578405 +
2 domain predictions
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LotjaGi1g1v0061200.5
n.a. Ubiquitin carboxyl-terminal hydrolase-like protein; TAIR: AT3G11910.1 ubiquitin-specific protease 13; Swiss-Prot: sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13; TrEMBL-Plants: tr|B0BLB2|B0BLB2_LOTJA CM0545.290.nc protein; Found in the gene: LotjaGi1g1v0061200 LjG1.1_chr1 8564636 8578405 +
2 domain predictions
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LotjaGi1g1v0061200.6
n.a. Ubiquitin carboxyl-terminal hydrolase-like protein; TAIR: AT3G11910.1 ubiquitin-specific protease 13; Swiss-Prot: sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13; TrEMBL-Plants: tr|B0BLB2|B0BLB2_LOTJA CM0545.290.nc protein; Found in the gene: LotjaGi1g1v0061200 LjG1.1_chr1 8564697 8578405 +
2 domain predictions
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LotjaGi1g1v0061200.7
n.a. Ubiquitin carboxyl-terminal hydrolase-like protein; TAIR: AT5G06600.1 ubiquitin-specific protease 12; Swiss-Prot: sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12; TrEMBL-Plants: tr|B0BLB2|B0BLB2_LOTJA CM0545.290.nc protein; Found in the gene: LotjaGi1g1v0061200 LjG1.1_chr1 8564765 8578405 +
2 domain predictions
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LotjaGi5g1v0256900.1
n.a. Ubiquitin carboxyl-terminal hydrolase, putative; TAIR: AT3G11910.1 ubiquitin-specific protease 13; Swiss-Prot: sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13; TrEMBL-Plants: tr|A0A067JU88|A0A067JU88_JATCU Uncharacterized protein; Found in the gene: LotjaGi5g1v0256900 LjG1.1_chr5 56560174 56582996 +
2 domain predictions
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LotjaGi6g1v0196100.1
n.a. Ubiquitin carboxyl-terminal hydrolase-like protein; TAIR: AT5G06600.1 ubiquitin-specific protease 12; Swiss-Prot: sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12; TrEMBL-Plants: tr|G7J6M6|G7J6M6_MEDTR Ubiquitin carboxyl-terminal hydrolase-like protein; Found in the gene: LotjaGi6g1v0196100 LjG1.1_chr6 49246689 49266796 +
2 domain predictions
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LotjaGi6g1v0196100.2
n.a. Ubiquitin carboxyl-terminal hydrolase-like protein; TAIR: AT3G11910.1 ubiquitin-specific protease 13; Swiss-Prot: sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13; TrEMBL-Plants: tr|G7J6M7|G7J6M7_MEDTR Ubiquitin carboxyl-terminal hydrolase-like protein; Found in the gene: LotjaGi6g1v0196100 LjG1.1_chr6 49247662 49265434 +
2 domain predictions
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LotjaGi6g1v0196100.4
n.a. Ubiquitin carboxyl-terminal hydrolase-like protein; TAIR: AT5G06600.1 ubiquitin-specific protease 12; Swiss-Prot: sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12; TrEMBL-Plants: tr|G7J6M6|G7J6M6_MEDTR Ubiquitin carboxyl-terminal hydrolase-like protein; Found in the gene: LotjaGi6g1v0196100 LjG1.1_chr6 49247885 49265434 +
2 domain predictions
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LotjaGi6g1v0196100.5
n.a. Ubiquitin carboxyl-terminal hydrolase-like protein; TAIR: AT3G11910.1 ubiquitin-specific protease 13; Swiss-Prot: sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13; TrEMBL-Plants: tr|G7J6M7|G7J6M7_MEDTR Ubiquitin carboxyl-terminal hydrolase-like protein; Found in the gene: LotjaGi6g1v0196100 LjG1.1_chr6 49247885 49265434 +
2 domain predictions
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LotjaGi6g1v0196400_LC.1
n.a. Ubiquitin carboxyl-terminal hydrolase 12; TAIR: AT3G11910.1 ubiquitin-specific protease 13; Swiss-Prot: sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13; TrEMBL-Plants: tr|A0A0B2SD70|A0A0B2SD70_GLYSO Ubiquitin carboxyl-terminal hydrolase 12; Found in the gene: LotjaGi6g1v0196400_LC LjG1.1_chr6 49318368 49347444 -
2 domain predictions
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LotjaGi6g1v0196400_LC.2
n.a. Ubiquitin carboxyl-terminal hydrolase 12; TAIR: AT3G11910.1 ubiquitin-specific protease 13; Swiss-Prot: sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13; TrEMBL-Plants: tr|A0A0B2SD70|A0A0B2SD70_GLYSO Ubiquitin carboxyl-terminal hydrolase 12; Found in the gene: LotjaGi6g1v0196400_LC LjG1.1_chr6 49341016 49346503 -
2 domain predictions
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