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Lj5g3v1698980.1

Overview

Field Value
Gene ID Lj5g3v1698980
Transcript ID Lj5g3v1698980.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: NAC domain-containing protein 78-like isoform X1 [Cicer arietinum] gi|502118168|ref|XP_004496133.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 571 571 – –
SUPERFAMILY
SSF101941
3 156 154 1.12E-54
IPR003441
PANTHER
PTHR31989
4 468 465 5.10E-123 –
PANTHER
PTHR31989:SF43
4 468 465 5.10E-123 –
ProSiteProfiles
PS51005
5 156 152 53.409
IPR003441
Pfam
PF02365
7 132 126 8.40E-26
IPR003441
TMHMM
TMhelix
566 588 23 – –
Phobius
TRANSMEMBRANE
572 593 22 – –
Phobius
CYTOPLASMIC_DOMAIN
594 596 3 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj5g3v1698980.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1698980.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.