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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1749290 |
| Transcript ID | Lj5g3v1749290.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable polygalacturonase-like [Cicer arietinum] gi|502150561|ref|XP_004508013.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | – | – | |
| TMHMM | 21 | 43 | 23 | – | – | |
| Phobius | 21 | 47 | 27 | – | – | |
| Phobius | 48 | 453 | 406 | – | – | |
| SUPERFAMILY | 65 | 453 | 389 | 4.49E-106 | ||
| Gene3D | 68 | 453 | 386 | 4.00E-121 | ||
| PANTHER | 71 | 453 | 383 | 5.80E-266 | – | |
| PANTHER | 71 | 453 | 383 | 5.80E-266 | – | |
| Pfam | 169 | 449 | 281 | 6.00E-50 | ||
| SMART | 241 | 268 | 28 | 170 | ||
| SMART | 269 | 290 | 22 | 160 | ||
| SMART | 303 | 325 | 23 | 570 | ||
| SMART | 331 | 352 | 22 | 640 | ||
| SMART | 360 | 381 | 22 | 340 | ||
| SMART | 394 | 416 | 23 | 7800 | ||
| SMART | 421 | 442 | 22 | 8100 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of Lj5g3v1749290.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1749290.1, powered by CORGI.
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