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Lj5g3v1839400.2

Overview

Field Value
Gene ID Lj5g3v1839400
Transcript ID Lj5g3v1839400.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Nuclear receptor corepressor [Medicago truncatula] gi|357443347|ref|XP_003591951.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 275 275 – –
MobiDBLite
mobidb-lite
285 304 20 – –
PANTHER
PTHR13992
408 1163 756 1.40E-142 –
Coils
Coil
425 452 28 – –
SUPERFAMILY
SSF46689
782 842 61 1.29E-13
IPR009057
ProSiteProfiles
PS51293
794 845 52 15.635
IPR017884
SMART
SM00717
795 843 49 9.90E-09
IPR001005
Pfam
PF00249
797 839 43 1.90E-06
IPR001005
Gene3D
G3DSA:1.10.10.60
798 839 42 1.10E-05
IPR009057
ProSiteProfiles
PS51293
1010 1061 52 14.067
IPR017884
SUPERFAMILY
SSF46689
1010 1061 52 2.99E-10
IPR009057
SMART
SM00717
1011 1059 49 4.00E-09
IPR001005
Gene3D
G3DSA:1.10.10.60
1014 1055 42 4.50E-07
IPR009057
Pfam
PF00249
1014 1055 42 1.20E-08
IPR001005
CDD
cd00167
1015 1055 41 7.52E-08 –
MobiDBLite
mobidb-lite
1070 1127 58 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj5g3v1839400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1839400.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.