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Lj5g3v1870820.1

Overview

Field Value
Gene ID Lj5g3v1870820
Transcript ID Lj5g3v1870820.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description sucrose transport protein SUT1 [Pisum sativum] gi|5230818|gb|AAD41024.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 24 24
Phobius 1 30 30
PANTHER 3 384 382 1.70E-256
PANTHER 3 384 382 1.70E-256
TIGRFAM 27 460 434 8.50E-205
SUPERFAMILY 31 451 421 6.54E-24
TMHMM 31 53 23
Gene3D 31 249 219 2.70E-21
Phobius 31 56 26
Pfam 38 404 367 8.30E-10
Phobius 57 67 11
TMHMM 66 85 20
Phobius 68 88 21
Phobius 89 99 11
Phobius 100 118 19
TMHMM 100 119 20
Phobius 119 137 19
Phobius 138 156 19
TMHMM 139 161 23
Phobius 157 176 20
Phobius 177 197 21
TMHMM 181 203 23
Phobius 198 224 27
TMHMM 224 243 20
Phobius 225 243 19
Phobius 244 288 45
TMHMM 288 307 20
Phobius 289 307 19
Phobius 308 326 19
Phobius 327 353 27
TMHMM 334 356 23
Phobius 354 364 11
Phobius 365 385 21
TMHMM 366 388 23
Phobius 386 404 19
Phobius 405 428 24
PANTHER 406 460 55 1.70E-256
PANTHER 406 460 55 1.70E-256
TMHMM 409 431 23
Phobius 429 460 32

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Integral component of plasma membrane The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Molecular function Sucrose transmembrane transporter activity Enables the transfer of sucrose from one side of a membrane to the other. Sucrose is the disaccharide O-beta-D-fructofuranosyl-(2->1)-alpha-D-glucopyranoside, a sweet-tasting, non-reducing sugar isolated industrially from sugar beet or sugar cane.
Biological process Sucrose transport The directed movement of sucrose into, out of or within a cell, or between cells by means of some agent such as a transporter or pore. Sucrose is the disaccharide fructofuranosyl-glucopyranoside.
Molecular function Transmembrane transporter activity Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj5g3v1870820.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1870820.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.