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Lj5g3v1889450.1

Overview

Field Value
Gene ID Lj5g3v1889450
Transcript ID Lj5g3v1889450.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable F-actin-capping protein subunit beta-like [Glycine max] gi|356535733|ref|XP_003536398.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10619
4 213 210 6.40E-143
IPR001698
SUPERFAMILY
SSF90096
5 209 205 1.57E-59 –
Pfam
PF01115
5 200 196 2.20E-78
IPR001698
PRINTS
PR00192
13 39 27 1.70E-37
IPR001698
ProSitePatterns
PS00231
18 23 6 –
IPR019771
PRINTS
PR00192
53 80 28 1.70E-37
IPR001698
PRINTS
PR00192
172 198 27 1.70E-37
IPR001698

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003779
Molecular function Actin binding Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0008290
Cellular component F-actin capping protein complex A heterodimer consisting of alpha and beta subunits that binds to and caps the barbed ends of actin filaments, thereby regulating the polymerization of actin monomers but not severing actin filaments.
Subterm of
Part of
GO:0030036
Biological process Actin cytoskeleton organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.
Subterm of
GO:0051016
Biological process Barbed-end actin filament capping The binding of a protein or protein complex to the barbed (or plus) end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj5g3v1889450.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1889450.1, powered by CORGI.

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