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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1939440 |
| Transcript ID | Lj5g3v1939440.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: cellulose synthase A catalytic subunit 6 [UDP]-forming] gi|356535774|ref|XP_003536418.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 533 | 533 | 0 | – | |
| PANTHER | 1 | 533 | 533 | 0 | – | |
| Phobius | 1 | 146 | 146 | – | – | |
| Coils | 86 | 106 | 21 | – | – | |
| MobiDBLite | 101 | 125 | 25 | – | – | |
| Phobius | 147 | 167 | 21 | – | – | |
| Phobius | 168 | 173 | 6 | – | – | |
| Phobius | 174 | 193 | 20 | – | – | |
| Phobius | 194 | 731 | 538 | – | – | |
| Pfam | 227 | 943 | 717 | 0 | ||
| SUPERFAMILY | 241 | 291 | 51 | 1.13E-09 | ||
| SUPERFAMILY | 395 | 516 | 122 | 1.13E-09 | ||
| PANTHER | 578 | 939 | 362 | 0 | – | |
| PANTHER | 578 | 939 | 362 | 0 | – | |
| SUPERFAMILY | 633 | 766 | 134 | 1.13E-09 | ||
| TMHMM | 731 | 753 | 23 | – | – | |
| Phobius | 732 | 753 | 22 | – | – | |
| Phobius | 754 | 764 | 11 | – | – | |
| Phobius | 765 | 783 | 19 | – | – | |
| TMHMM | 765 | 787 | 23 | – | – | |
| Phobius | 784 | 802 | 19 | – | – | |
| TMHMM | 802 | 824 | 23 | – | – | |
| Phobius | 803 | 825 | 23 | – | – | |
| Phobius | 826 | 845 | 20 | – | – | |
| Phobius | 846 | 870 | 25 | – | – | |
| TMHMM | 849 | 871 | 23 | – | – | |
| Phobius | 871 | 881 | 11 | – | – | |
| TMHMM | 881 | 903 | 23 | – | – | |
| Phobius | 882 | 903 | 22 | – | – | |
| Phobius | 904 | 914 | 11 | – | – | |
| Phobius | 915 | 935 | 21 | – | – | |
| TMHMM | 916 | 935 | 20 | – | – | |
| Phobius | 936 | 954 | 19 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of Lj5g3v1939440.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1939440.1, powered by CORGI.
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