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Lj5g3v1950950.1

Overview

Field Value
Gene ID Lj5g3v1950950
Transcript ID Lj5g3v1950950.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: protein FAM188A homolog isoform X2 [Cicer arietinum] gi|502119017|ref|XP_004496476.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 85 85 – –
PANTHER
PTHR12473:SF4
1 179 179 2.70E-210 –
PANTHER
PTHR12473
1 179 179 2.70E-210 –
SMART
SM00726
5 24 20 0.0026
IPR003903
ProSiteProfiles
PS50330
5 24 20 10.636
IPR003903
SMART
SM01174
118 494 377 6.50E-145
IPR025257
Pfam
PF13898
120 430 311 5.70E-58
IPR025257
PANTHER
PTHR12473:SF4
197 471 275 2.70E-210 –
PANTHER
PTHR12473
197 471 275 2.70E-210 –
Gene3D
G3DSA:1.10.238.10
427 494 68 3.70E-05
IPR011992
SUPERFAMILY
SSF47473
433 493 61 1.02E-05
IPR011992
PANTHER
PTHR12473
512 525 14 2.70E-210 –
PANTHER
PTHR12473:SF4
512 525 14 2.70E-210 –
PANTHER
PTHR12473:SF4
545 617 73 2.70E-210 –
PANTHER
PTHR12473
545 617 73 2.70E-210 –
MobiDBLite
mobidb-lite
565 592 28 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 24

Expression data

Expression pattern

Expression pattern of Lj5g3v1950950.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1950950.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.