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Lj5g3v1973380.3

Overview

Field Value
Gene ID Lj5g3v1973380
Transcript ID Lj5g3v1973380.3
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: TMV resistance protein N-like [Glycine max] gi|356545122|ref|XP_003540994.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11017
1 251 251 2.40E-141 –
PANTHER
PTHR11017:SF155
1 251 251 2.40E-141 –
SUPERFAMILY
SSF46785
2 101 100 2.29E-11
IPR011991
SUPERFAMILY
SSF52058
80 259 180 1.87E-27
IPR032675
Gene3D
G3DSA:3.80.10.10
130 237 108 1.80E-21
IPR032675
SUPERFAMILY
SSF52058
295 402 108 1.87E-27
IPR032675
Gene3D
G3DSA:3.80.10.10
297 369 73 1.80E-21
IPR032675
ProSiteProfiles
PS51450
306 327 22 6.149
IPR001611
PANTHER
PTHR11017:SF155
306 470 165 2.40E-141 –
PANTHER
PTHR11017
306 470 165 2.40E-141 –
Pfam
PF13855
307 362 56 8.60E-07
IPR001611
ProSiteProfiles
PS51450
329 350 22 7.134
IPR001611
ProSiteProfiles
PS51450
352 374 23 5.271
IPR001611

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj5g3v1973380.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1973380.3, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.