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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1988850 |
| Transcript ID | Lj5g3v1988850.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max] gi|356559762|ref|XP_003548166.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 34 | 34 | – | – | |
| PANTHER | 2 | 472 | 471 | 9.70E-263 | – | |
| PANTHER | 2 | 472 | 471 | 9.70E-263 | – | |
| CDD | 32 | 466 | 435 | 5.14E-126 | – | |
| TMHMM | 34 | 53 | 20 | – | – | |
| Phobius | 35 | 53 | 19 | – | – | |
| Pfam | 42 | 202 | 161 | 2.60E-30 | ||
| TIGRFAM | 42 | 437 | 396 | 4.80E-69 | ||
| Phobius | 54 | 72 | 19 | – | – | |
| Phobius | 73 | 97 | 25 | – | – | |
| TMHMM | 73 | 95 | 23 | – | – | |
| Phobius | 98 | 117 | 20 | – | – | |
| TMHMM | 116 | 138 | 23 | – | – | |
| Phobius | 118 | 135 | 18 | – | – | |
| Phobius | 136 | 154 | 19 | – | – | |
| TMHMM | 148 | 170 | 23 | – | – | |
| Phobius | 155 | 172 | 18 | – | – | |
| Phobius | 173 | 183 | 11 | – | – | |
| TMHMM | 183 | 205 | 23 | – | – | |
| Phobius | 184 | 208 | 25 | – | – | |
| Phobius | 209 | 219 | 11 | – | – | |
| TMHMM | 215 | 237 | 23 | – | – | |
| Phobius | 220 | 237 | 18 | – | – | |
| Phobius | 238 | 257 | 20 | – | – | |
| TMHMM | 258 | 280 | 23 | – | – | |
| Phobius | 258 | 282 | 25 | – | – | |
| Pfam | 262 | 423 | 162 | 2.30E-21 | ||
| Phobius | 283 | 287 | 5 | – | – | |
| Phobius | 288 | 314 | 27 | – | – | |
| TMHMM | 290 | 312 | 23 | – | – | |
| Phobius | 315 | 333 | 19 | – | – | |
| TMHMM | 332 | 354 | 23 | – | – | |
| Phobius | 334 | 356 | 23 | – | – | |
| Phobius | 357 | 375 | 19 | – | – | |
| Phobius | 376 | 399 | 24 | – | – | |
| TMHMM | 377 | 399 | 23 | – | – | |
| Phobius | 400 | 405 | 6 | – | – | |
| TMHMM | 406 | 428 | 23 | – | – | |
| Phobius | 406 | 429 | 24 | – | – | |
| Phobius | 430 | 434 | 5 | – | – | |
| TMHMM | 433 | 455 | 23 | – | – | |
| Phobius | 435 | 456 | 22 | – | – | |
| Phobius | 457 | 481 | 25 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Antiporter activity | Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out). | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Xenobiotic transmembrane transporter activity | Enables the directed movement of a xenobiotic, a compound foreign to living organisms, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj5g3v1988850.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1988850.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.