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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2056200 |
| Transcript ID | Lj5g3v2056200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Lipoxygenase [Medicago truncatula] gi|357444265|ref|XP_003592410.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 299 | 299 | 0 | – | |
| PANTHER | 1 | 299 | 299 | 0 | ||
| SMART | 8 | 153 | 146 | 7.80E-58 | ||
| CDD | 8 | 153 | 146 | 5.85E-52 | – | |
| SUPERFAMILY | 9 | 156 | 148 | 5.28E-50 | ||
| Gene3D | 12 | 165 | 154 | 2.00E-58 | ||
| ProSiteProfiles | 23 | 152 | 130 | 24.681 | ||
| Pfam | 49 | 151 | 103 | 8.90E-20 | ||
| PRINTS | 122 | 140 | 19 | 6.80E-81 | ||
| PRINTS | 148 | 169 | 22 | 6.80E-81 | ||
| ProSiteProfiles | 155 | 595 | 441 | 176.728 | ||
| SUPERFAMILY | 157 | 592 | 436 | 4.45E-162 | ||
| Pfam | 165 | 592 | 428 | 1.40E-186 | ||
| Gene3D | 166 | 260 | 95 | 9.90E-39 | – | |
| PRINTS | 187 | 203 | 17 | 6.80E-81 | ||
| PRINTS | 220 | 239 | 20 | 6.80E-81 | ||
| Gene3D | 261 | 350 | 90 | 2.10E-30 | ||
| PRINTS | 289 | 310 | 22 | 6.80E-81 | ||
| PANTHER | 335 | 590 | 256 | 0 | – | |
| PANTHER | 335 | 590 | 256 | 0 | ||
| PRINTS | 338 | 354 | 17 | 6.80E-81 | ||
| Gene3D | 371 | 504 | 134 | 3.30E-56 | – | |
| PRINTS | 377 | 396 | 20 | 6.80E-81 | ||
| PRINTS | 443 | 467 | 25 | 6.80E-81 | ||
| PRINTS | 490 | 507 | 18 | 2.90E-23 | ||
| Gene3D | 506 | 590 | 85 | 1.50E-36 | – | |
| PRINTS | 508 | 525 | 18 | 2.90E-23 | ||
| ProSitePatterns | 508 | 522 | 15 | – | ||
| PRINTS | 528 | 548 | 21 | 2.90E-23 | ||
| ProSitePatterns | 535 | 545 | 11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of Lj5g3v2056200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2056200.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.