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Lj5g3v2057340.1

Overview

Field Value
Gene ID Lj5g3v2057340
Transcript ID Lj5g3v2057340.1
Lotus japonicus genome version MG20 v3.0
Description Hexose transporter [Medicago truncatula] gi|357444281|ref|XP_003592418.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS50850
1 119 119 13.589
IPR020846
PANTHER
PTHR23500:SF70
1 143 143 6.10E-99 –
PANTHER
PTHR23500
1 143 143 6.10E-99 –
Phobius
CYTOPLASMIC_DOMAIN
1 26 26 – –
Pfam
PF00083
4 128 125 4.90E-26
IPR005828
Phobius
TRANSMEMBRANE
27 47 21 – –
Gene3D
G3DSA:1.20.1250.20
27 123 97 5.40E-04 –
TMHMM
TMhelix
28 50 23 – –
SUPERFAMILY
SSF103473
29 128 100 7.59E-11
IPR020846
PRINTS
PR00171
32 53 22 9.90E-11
IPR003663
Phobius
NON_CYTOPLASMIC_DOMAIN
48 66 19 – –
PRINTS
PR00171
55 67 13 9.90E-11
IPR003663
TMHMM
TMhelix
65 87 23 – –
Phobius
TRANSMEMBRANE
67 87 21 – –
Phobius
CYTOPLASMIC_DOMAIN
88 93 6 – –
Phobius
TRANSMEMBRANE
94 115 22 – –
TMHMM
TMhelix
94 116 23 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
116 143 28 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of
GO:0022857
Molecular function Transmembrane transporter activity Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
Subterm of
GO:0055085
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj5g3v2057340.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2057340.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.