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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2057350 |
| Transcript ID | Lj5g3v2057350.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: sugar transport protein 13-like [Glycine max] gi|356541627|ref|XP_003539275.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | – | – | |
| PANTHER | 11 | 503 | 493 | 0 | – | |
| PANTHER | 11 | 503 | 493 | 0 | – | |
| Phobius | 20 | 40 | 21 | – | – | |
| TMHMM | 20 | 42 | 23 | – | – | |
| TIGRFAM | 22 | 485 | 464 | 9.90E-116 | ||
| ProSiteProfiles | 27 | 478 | 452 | 44.577 | ||
| Pfam | 28 | 486 | 459 | 2.00E-118 | ||
| SUPERFAMILY | 29 | 485 | 457 | 1.96E-57 | ||
| PRINTS | 35 | 45 | 11 | 5.90E-32 | ||
| Gene3D | 36 | 229 | 194 | 2.40E-19 | – | |
| Phobius | 41 | 82 | 42 | – | – | |
| CDD | 79 | 473 | 395 | 7.64E-27 | ||
| TMHMM | 82 | 104 | 23 | – | – | |
| Phobius | 83 | 101 | 19 | – | – | |
| Phobius | 102 | 112 | 11 | – | – | |
| Phobius | 113 | 132 | 20 | – | – | |
| TMHMM | 116 | 133 | 18 | – | – | |
| Phobius | 133 | 137 | 5 | – | – | |
| Phobius | 138 | 160 | 23 | – | – | |
| TMHMM | 138 | 160 | 23 | – | – | |
| PRINTS | 139 | 158 | 20 | 5.90E-32 | ||
| Phobius | 161 | 171 | 11 | – | – | |
| TMHMM | 172 | 194 | 23 | – | – | |
| Phobius | 172 | 193 | 22 | – | – | |
| Phobius | 194 | 204 | 11 | – | – | |
| Phobius | 205 | 225 | 21 | – | – | |
| TMHMM | 209 | 231 | 23 | – | – | |
| Phobius | 226 | 285 | 60 | – | – | |
| Gene3D | 284 | 487 | 204 | 1.10E-17 | – | |
| TMHMM | 285 | 307 | 23 | – | – | |
| Phobius | 286 | 310 | 25 | – | – | |
| PRINTS | 296 | 306 | 11 | 5.90E-32 | ||
| Phobius | 311 | 321 | 11 | – | – | |
| Phobius | 322 | 344 | 23 | – | – | |
| TMHMM | 322 | 344 | 23 | – | – | |
| ProSitePatterns | 340 | 357 | 18 | – | ||
| Phobius | 345 | 350 | 6 | – | – | |
| Phobius | 351 | 373 | 23 | – | – | |
| TMHMM | 351 | 373 | 23 | – | – | |
| Phobius | 374 | 384 | 11 | – | – | |
| Phobius | 385 | 406 | 22 | – | – | |
| TMHMM | 388 | 410 | 23 | – | – | |
| PRINTS | 391 | 412 | 22 | 5.90E-32 | ||
| Phobius | 407 | 426 | 20 | – | – | |
| PRINTS | 414 | 426 | 13 | 5.90E-32 | ||
| TMHMM | 423 | 445 | 23 | – | – | |
| Phobius | 427 | 447 | 21 | – | – | |
| Phobius | 448 | 452 | 5 | – | – | |
| Phobius | 453 | 474 | 22 | – | – | |
| TMHMM | 455 | 474 | 20 | – | – | |
| Phobius | 475 | 523 | 49 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj5g3v2057350.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2057350.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.