Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj5g3v2133790.1

Overview

Field Value
Gene ID Lj5g3v2133790
Transcript ID Lj5g3v2133790.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 12-like isoform X2 [Cicer arietinum] gi|502126642|ref|XP_004499384.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 48 48 – –
MobiDBLite
mobidb-lite
63 83 21 – –
PANTHER
PTHR11200
132 721 590 0 –
PANTHER
PTHR11200:SF133
132 721 590 0 –
SMART
SM00320
180 218 39 2.9
IPR001680
ProSiteProfiles
PS50294
186 273 88 8.703
IPR017986
Gene3D
G3DSA:2.130.10.10
189 531 343 6.70E-20
IPR015943
SUPERFAMILY
SSF50978
190 361 172 2.56E-22
IPR017986
SMART
SM00320
226 264 39 0.57
IPR001680
SMART
SM00320
406 444 39 330
IPR001680
SUPERFAMILY
SSF50978
430 530 101 2.56E-22
IPR017986
SMART
SM00320
446 483 38 50
IPR001680
SUPERFAMILY
SSF56219
527 721 195 1.02E-59
IPR005135
Gene3D
G3DSA:3.60.10.10
532 721 190 7.40E-97
IPR005135
SMART
SM00128
548 902 355 5.00E-93
IPR000300
CDD
cd09074
550 896 347 2.79E-109 –
Pfam
PF03372
555 887 333 1.20E-08
IPR005135
PANTHER
PTHR11200:SF133
749 1079 331 0 –
PANTHER
PTHR11200
749 1079 331 0 –
Gene3D
G3DSA:3.60.10.10
754 919 166 7.40E-97
IPR005135
SUPERFAMILY
SSF56219
754 920 167 1.02E-59
IPR005135
ProSiteProfiles
PS50202
926 1087 162 9.926
IPR000535
MobiDBLite
mobidb-lite
1057 1087 31 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0046856
Biological process Phosphatidylinositol dephosphorylation The process of removing one or more phosphate groups from a phosphatidylinositol.
Subterm of

Genome browser

LORE1 insertions 22

Expression data

Expression pattern

Expression pattern of Lj5g3v2133790.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2133790.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.