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Lj5g3v2147170.1

Overview

Field Value
Gene ID Lj5g3v2147170
Transcript ID Lj5g3v2147170.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable splicing factor 3A subunit 1-like isoform 1 [Glycine max] gi|356575640|ref|XP_003555946.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 67 67 – –
PANTHER
PTHR15316
2 34 33 2.30E-271 –
PANTHER
PTHR15316:SF1
2 34 33 2.30E-271 –
SUPERFAMILY
SSF109905
43 122 80 3.92E-23
IPR000061
PANTHER
PTHR15316
50 507 458 2.30E-271 –
PANTHER
PTHR15316:SF1
50 507 458 2.30E-271 –
SMART
SM00648
68 121 54 1.30E-25
IPR000061
Pfam
PF01805
68 119 52 9.80E-21
IPR000061
ProSiteProfiles
PS50128
70 112 43 18.135
IPR000061
MobiDBLite
mobidb-lite
121 152 32 – –
SUPERFAMILY
SSF109905
170 244 75 5.76E-21
IPR000061
Pfam
PF01805
192 243 52 3.10E-17
IPR000061
SMART
SM00648
192 245 54 4.30E-21
IPR000061
ProSiteProfiles
PS50128
194 236 43 16.862
IPR000061
Pfam
PF12230
263 476 214 1.70E-60
IPR022030
Coils
Coil
278 298 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj5g3v2147170.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2147170.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.