Domain Predictions — View

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PF12230

Source: Pfam

Description

Pre-mRNA splicing factor PRP21 like protein

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 21

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0198029.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable splicing factor 3A subunit 1-like isoform 1 [Glycine max] gi\|356575640\|ref\|XP_003555946.1\|	Domains Coil IPR000061 IPR022030 PF01805 PF12230 PS50128 PTHR15316 PTHR15316:SF1 SM00648 SSF109905 mobidb-lite	11
Lj0g3v0198049.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable splicing factor 3A subunit 1-like isoform X1 [Cicer arietinum] gi\|502156678\|ref\|XP_004510593.1\|	Domains IPR022030 PF12230 PTHR15316 PTHR15316:SF1 mobidb-lite	5
Lj0g3v0279589.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable splicing factor 3A subunit 1-like isoform 1 [Glycine max] gi\|356575640\|ref\|XP_003555946.1\|	Domains Coil G3DSA:3.10.20.90 IPR000061 IPR000626 IPR022030 IPR029071 PF00240 PF01805 PF12230 PR01217 PS50053 PS50128 PTHR15316 PTHR15316:SF1 SM00213 SM00648 SSF109905 SSF54236 mobidb-lite	19
Lj3g3v2665440.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable splicing factor 3A subunit 1-like isoform X1 [Cicer arietinum] gi\|502156678\|ref\|XP_004510593.1\|	Domains G3DSA:3.10.20.90 IPR000626 IPR022030 IPR029071 PF00240 PF12230 PS50053 PTHR15316 PTHR15316:SF1 SM00213 SSF54236 mobidb-lite	12
Lj5g3v2147170.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable splicing factor 3A subunit 1-like isoform 1 [Glycine max] gi\|356575640\|ref\|XP_003555946.1\|	Domains Coil IPR000061 IPR022030 PF01805 PF12230 PS50128 PTHR15316 PTHR15316:SF1 SM00648 SSF109905 mobidb-lite	11
Lj5g3v2147180.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable splicing factor 3A subunit 1-like isoform 1 [Glycine max] gi\|356575640\|ref\|XP_003555946.1\|	Domains Coil IPR000061 IPR022030 PF01805 PF12230 PS50128 PTHR15316 PTHR15316:SF1 SM00648 SSF109905 mobidb-lite	11
Lj5g3v2147190.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–		Domains CYTOPLASMIC_DOMAIN Coil IPR022030 NON_CYTOPLASMIC_DOMAIN PF12230 PTHR15316 PTHR15316:SF1 TRANSMEMBRANE	8
Lj5g3v2149450.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–		Domains IPR022030 PF12230 PR01217 PTHR15316 PTHR15316:SF1 mobidb-lite	6
Lj5g3v2149460.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable splicing factor 3A subunit 1-like isoform 1 [Glycine max] gi\|356575640\|ref\|XP_003555946.1\|	Domains Coil IPR000061 IPR022030 PF01805 PF12230 PS50128 PTHR15316 PTHR15316:SF1 SM00648 SSF109905 mobidb-lite	11
LotjaGi2g1v0083000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp\|Q8RXF1\|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr\|V7BB20\|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0083000	Domains Coil G3DSA:1.10.10.790 G3DSA:3.10.20.90 IPR000061 IPR000626 IPR022030 IPR029071 IPR035967 PF00240 PF01805 PF12230 PS50053 PS50128 PTHR15316 PTHR15316:SF1 SM00213 SM00648 SSF109905 SSF54236 cd01800 mobidb-lite	21
LotjaGi3g1v0421600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp\|Q8RXF1\|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr\|A0A0S3SM17\|A0A0S3SM17_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0421600	Domains Coil G3DSA:1.10.10.790 G3DSA:3.10.20.90 IPR000061 IPR000626 IPR022030 IPR029071 IPR035967 PF00240 PF01805 PF12230 PR01217 PS50053 PS50128 PTHR15316 PTHR15316:SF1 SM00213 SM00648 SSF109905 SSF54236 cd01800 mobidb-lite	22
LotjaGi3g1v0421600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp\|Q8RXF1\|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr\|A0A0S3SM17\|A0A0S3SM17_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0421600	Domains Coil G3DSA:1.10.10.790 G3DSA:3.10.20.90 IPR000061 IPR000626 IPR022030 IPR029071 IPR035967 PF00240 PF01805 PF12230 PR01217 PS50053 PS50128 PTHR15316 PTHR15316:SF1 SM00213 SM00648 SSF109905 SSF54236 cd01800 mobidb-lite	22
LotjaGi3g1v0421600.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp\|Q8RXF1\|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr\|A0A0S3SM17\|A0A0S3SM17_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0421600	Domains Coil G3DSA:1.10.10.790 G3DSA:3.10.20.90 IPR000061 IPR000626 IPR022030 IPR029071 IPR035967 PF00240 PF01805 PF12230 PR01217 PS50053 PS50128 PTHR15316 PTHR15316:SF1 SM00213 SM00648 SSF109905 SSF54236 cd01800 mobidb-lite	22
LotjaGi3g1v0421600.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp\|Q8RXF1\|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr\|A0A0S3SM17\|A0A0S3SM17_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0421600	Domains Coil G3DSA:1.10.10.790 G3DSA:3.10.20.90 IPR000061 IPR000626 IPR022030 IPR029071 IPR035967 PF00240 PF01805 PF12230 PR01217 PS50053 PS50128 PTHR15316 PTHR15316:SF1 SM00213 SM00648 SSF109905 SSF54236 cd01800 mobidb-lite	22
LotjaGi5g1v0238500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp\|Q8RXF1\|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr\|V7BB20\|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0238500	Domains Coil G3DSA:3.10.20.90 IPR000626 IPR022030 IPR029071 PF00240 PF12230 PR01217 PS50053 PTHR15316 PTHR15316:SF1 SM00213 SSF54236 cd01800 mobidb-lite	15
LotjaGi5g1v0238500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp\|Q8RXF1\|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr\|V7BB20\|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0238500	Domains Coil G3DSA:3.10.20.90 IPR000626 IPR022030 IPR029071 PF00240 PF12230 PR01217 PS50053 PTHR15316 PTHR15316:SF1 SM00213 SSF54236 cd01800 mobidb-lite	15
LotjaGi5g1v0238500.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp\|Q8RXF1\|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr\|V7BB20\|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0238500	Domains Coil G3DSA:3.10.20.90 IPR000626 IPR022030 IPR029071 PF00240 PF12230 PR01217 PS50053 PTHR15316 PTHR15316:SF1 SM00213 SSF54236 cd01800 mobidb-lite	15
LotjaGi5g1v0238500.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp\|Q8RXF1\|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr\|V7BB20\|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0238500	Domains Coil G3DSA:3.10.20.90 IPR000626 IPR022030 IPR029071 PF00240 PF12230 PR01217 PS50053 PTHR15316 PTHR15316:SF1 SM00213 SSF54236 cd01800 mobidb-lite	15
LotjaGi5g1v0330300.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp\|Q8RXF1\|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr\|V7BB20\|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0330300	Domains Coil G3DSA:1.10.10.790 G3DSA:3.10.20.90 IPR000061 IPR000626 IPR022030 IPR029071 IPR035967 PF00240 PF01805 PF12230 PR01217 PS50053 PS50128 PTHR15316 PTHR15316:SF1 SM00213 SM00648 SSF109905 SSF54236 cd01800 mobidb-lite	22
LotjaGi5g1v0330300.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp\|Q8RXF1\|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr\|V7BB20\|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0330300	Domains Coil G3DSA:1.10.10.790 G3DSA:3.10.20.90 IPR000061 IPR000626 IPR022030 IPR029071 IPR035967 PF00240 PF01805 PF12230 PR01217 PS50053 PS50128 PTHR15316 PTHR15316:SF1 SM00213 SM00648 SSF109905 SSF54236 cd01800 mobidb-lite	22
LotjaGi5g1v0330300.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp\|Q8RXF1\|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr\|V7BB20\|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0330300	Domains Coil G3DSA:1.10.10.790 G3DSA:3.10.20.90 IPR000061 IPR000626 IPR022030 IPR029071 IPR035967 PF00240 PF01805 PF12230 PR01217 PS50053 PS50128 PTHR15316 PTHR15316:SF1 SM00213 SM00648 SSF109905 SSF54236 cd01800 mobidb-lite	22

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	4.76