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Lj5g3v2149460.1

Overview

Field Value
Gene ID Lj5g3v2149460
Transcript ID Lj5g3v2149460.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable splicing factor 3A subunit 1-like isoform 1 [Glycine max] gi|356575640|ref|XP_003555946.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR15316
2 680 679 0 –
PANTHER
PTHR15316:SF1
2 680 679 0 –
MobiDBLite
mobidb-lite
11 47 37 – –
SUPERFAMILY
SSF109905
46 117 72 9.42E-23
IPR000061
SMART
SM00648
63 116 54 1.30E-25
IPR000061
Pfam
PF01805
63 114 52 3.00E-20
IPR000061
ProSiteProfiles
PS50128
65 107 43 18.206
IPR000061
MobiDBLite
mobidb-lite
117 157 41 – –
SUPERFAMILY
SSF109905
170 243 74 1.96E-19
IPR000061
SMART
SM00648
191 244 54 2.80E-19
IPR000061
Pfam
PF01805
191 242 52 4.00E-15
IPR000061
ProSiteProfiles
PS50128
193 235 43 15.996
IPR000061
Pfam
PF12230
262 475 214 2.00E-59
IPR022030
Coils
Coil
277 297 21 – –
MobiDBLite
mobidb-lite
523 560 38 – –
MobiDBLite
mobidb-lite
641 680 40 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj5g3v2149460.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2149460.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.