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Lj5g3v2179840.1

Overview

Field Value
Gene ID Lj5g3v2179840
Transcript ID Lj5g3v2179840.1
Lotus japonicus genome version MG20 v3.0
Description Uncharacterized protein isoform 1 [Theobroma cacao] gi|508708156|gb|EOY00053.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF031088
2 572 571 2.90E-255
IPR016969
PANTHER
PTHR11005
40 133 94 8.10E-248 –
PANTHER
PTHR11005:SF2
40 133 94 8.10E-248 –
Gene3D
G3DSA:3.40.50.1820
45 126 82 2.30E-55
IPR029058
SUPERFAMILY
SSF53474
54 140 87 4.73E-27
IPR029058
MobiDBLite
mobidb-lite
142 164 23 – –
PANTHER
PTHR11005
313 572 260 8.10E-248 –
PANTHER
PTHR11005:SF2
313 572 260 8.10E-248 –
Gene3D
G3DSA:3.40.50.1820
317 571 255 2.30E-55
IPR029058
SUPERFAMILY
SSF53474
318 392 75 4.73E-27
IPR029058
Pfam
PF00561
327 546 220 8.70E-08
IPR000073
ProSitePatterns
PS00708
333 363 31 –
IPR002471
SUPERFAMILY
SSF53474
491 568 78 4.73E-27
IPR029058

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004252
Molecular function Serine-type endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
Subterm of
GO:0006508
Biological process Proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj5g3v2179840.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2179840.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.