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Lj5g3v2240860.1

Overview

Field Value
Gene ID Lj5g3v2240860
Transcript ID Lj5g3v2240860.1
Related isoforms 3
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: tubulin-specific chaperone D-like [Glycine max] gi|356534400|ref|XP_003535743.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12658:SF0
1 267 267 1.10E-244
IPR033162
PANTHER
PTHR12658
1 267 267 1.10E-244 –
Gene3D
G3DSA:1.25.10.10
3 201 199 1.30E-11
IPR011989
SUPERFAMILY
SSF48371
4 32 29 3.00E-19
IPR016024
SUPERFAMILY
SSF48371
86 273 188 3.00E-19
IPR016024
PANTHER
PTHR12658
300 615 316 1.10E-244 –
PANTHER
PTHR12658:SF0
300 615 316 1.10E-244
IPR033162
Gene3D
G3DSA:1.25.10.10
303 375 73 1.30E-11
IPR011989
SUPERFAMILY
SSF48371
312 370 59 3.00E-19
IPR016024
Pfam
PF12612
318 506 189 6.20E-55
IPR022577
Gene3D
G3DSA:1.25.10.10
484 576 93 1.30E-11
IPR011989
SUPERFAMILY
SSF48371
497 584 88 3.00E-19
IPR016024
MobiDBLite
mobidb-lite
606 638 33 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005096
Molecular function GTPase activator activity Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP.
Subterm of
GO:0007021
Biological process Tubulin complex assembly The aggregation and bonding together of alpha- and beta-tubulin to form a tubulin heterodimer.
Subterm of
GO:0007023
Biological process Post-chaperonin tubulin folding pathway Completion of folding of alpha- and beta-tubulin; takes place subsequent to chaperonin-mediated partial folding; mediated by a complex of folding cofactors.
Subterm of
GO:0048487
Molecular function Beta-tubulin binding Interacting selectively and non-covalently with the microtubule constituent protein beta-tubulin.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj5g3v2240860.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2240860.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.