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Lj5g3v2244610.1

Overview

Field Value
Gene ID Lj5g3v2244610
Transcript ID Lj5g3v2244610.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription factor ABORTED MICROSPORES-like [Glycine max] gi|356534418|ref|XP_003535752.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Pfam
PF14215
7 87 81 3.40E-10
IPR025610
PANTHER
PTHR31945
48 336 289 3.50E-185 –
PANTHER
PTHR31945:SF11
48 336 289 3.50E-185 –
MobiDBLite
mobidb-lite
237 279 43 – –
CDD
cd00083
267 322 56 2.18E-12 –
ProSiteProfiles
PS50888
268 317 50 15.294
IPR011598
SUPERFAMILY
SSF47459
271 331 61 1.06E-16
IPR011598
SMART
SM00353
274 323 50 3.30E-15
IPR011598
Gene3D
G3DSA:4.10.280.10
274 331 58 2.40E-16
IPR011598
Pfam
PF00010
275 318 44 1.50E-09
IPR011598
Coils
Coil
307 334 28 – –
MobiDBLite
mobidb-lite
327 389 63 – –
PANTHER
PTHR31945:SF11
362 500 139 3.50E-185 –
PANTHER
PTHR31945
362 500 139 3.50E-185 –
SUPERFAMILY
SSF55021
403 471 69 2.86E-05 –
CDD
cd04873
406 469 64 1.58E-04 –
MobiDBLite
mobidb-lite
477 500 24 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj5g3v2244610.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2244610.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.