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Lj5g3v2258260.1

Overview

Field Value
Gene ID Lj5g3v2258260
Transcript ID Lj5g3v2258260.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ZF-HD homeobox protein At4g24660-like [Glycine max] gi|356550836|ref|XP_003543789.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 33 33 – –
PANTHER
PTHR31948
1 313 313 1.70E-116 –
PANTHER
PTHR31948:SF8
1 313 313 1.70E-116 –
ProDom
PD125774
65 118 54 1.00E-22
IPR006456
Pfam
PF04770
65 119 55 1.00E-27
IPR006456
TIGRFAM
TIGR01566
66 118 53 4.50E-30
IPR006456
ProSiteProfiles
PS51523
67 118 52 26.54
IPR006456
MobiDBLite
mobidb-lite
135 204 70 – –
Gene3D
G3DSA:1.10.10.60
187 257 71 7.80E-30
IPR009057
SUPERFAMILY
SSF46689
187 257 71 4.78E-19
IPR009057
TIGRFAM
TIGR01565
196 253 58 1.50E-26
IPR006455
MobiDBLite
mobidb-lite
255 315 61 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj5g3v2258260.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2258260.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.