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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2265250 |
| Transcript ID | Lj5g3v2265250.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: nucleolar protein 13-like [Glycine max] gi|356536490|ref|XP_003536770.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 55 | 172 | 118 | – | – | |
| Coils | 110 | 138 | 29 | – | – | |
| Gene3D | 118 | 255 | 138 | 3.50E-18 | ||
| PANTHER | 134 | 152 | 19 | 9.20E-75 | – | |
| PANTHER | 134 | 152 | 19 | 9.20E-75 | – | |
| SUPERFAMILY | 148 | 257 | 110 | 1.25E-20 | ||
| PANTHER | 172 | 348 | 177 | 9.20E-75 | – | |
| PANTHER | 172 | 348 | 177 | 9.20E-75 | – | |
| ProSiteProfiles | 175 | 252 | 78 | 14.88 | ||
| SMART | 176 | 248 | 73 | 4.40E-18 | ||
| CDD | 177 | 248 | 72 | 3.96E-31 | – | |
| Pfam | 177 | 244 | 68 | 1.80E-12 | ||
| Gene3D | 256 | 342 | 87 | 1.10E-16 | ||
| SUPERFAMILY | 261 | 349 | 89 | 4.70E-19 | ||
| ProSiteProfiles | 269 | 345 | 77 | 13.396 | ||
| SMART | 270 | 341 | 72 | 1.00E-14 | ||
| CDD | 270 | 341 | 72 | 3.37E-29 | – | |
| Pfam | 271 | 338 | 68 | 1.70E-07 | ||
| SUPERFAMILY | 354 | 388 | 35 | 1.15E-07 | ||
| Gene3D | 364 | 385 | 22 | 2.20E-13 | ||
| Pfam | 366 | 385 | 20 | 0.58 | – | |
| ProSiteProfiles | 368 | 385 | 18 | 9.686 | ||
| SMART | 369 | 385 | 17 | 0.0075 | ||
| MobiDBLite | 394 | 425 | 32 | – | – | |
| SUPERFAMILY | 418 | 449 | 32 | 6.59E-08 | ||
| Gene3D | 426 | 438 | 13 | 2.20E-13 | ||
| ProSiteProfiles | 429 | 446 | 18 | 9.834 | ||
| SMART | 430 | 446 | 17 | 0.0059 | ||
| Pfam | 430 | 446 | 17 | 0.0046 | ||
| Gene3D | 439 | 449 | 11 | 2.10E-07 | ||
| MobiDBLite | 457 | 487 | 31 | – | – | |
| SUPERFAMILY | 479 | 510 | 32 | 6.59E-08 | ||
| Gene3D | 486 | 498 | 13 | 4.20E-15 | ||
| ProSiteProfiles | 490 | 507 | 18 | 9.834 | ||
| SMART | 491 | 507 | 17 | 0.0059 | ||
| Pfam | 491 | 507 | 17 | 0.0046 | ||
| Gene3D | 499 | 508 | 10 | 2.10E-07 | ||
| MobiDBLite | 512 | 550 | 39 | – | – | |
| SUPERFAMILY | 544 | 570 | 27 | 3.66E-07 | ||
| Gene3D | 547 | 569 | 23 | 4.20E-15 | ||
| ProSiteProfiles | 550 | 567 | 18 | 9.867 | ||
| SMART | 551 | 567 | 17 | 0.0056 | ||
| Pfam | 551 | 567 | 17 | 2.40E-04 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj5g3v2265250.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2265250.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.