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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2291460 |
| Transcript ID | Lj5g3v2291460.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: protoheme IX farnesyltransferase, mitochondrial-like [Glycine max] gi|356576869|ref|XP_003556552.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 25 | 25 | – | – | |
| Phobius | 1 | 70 | 70 | – | – | |
| Hamap | 59 | 340 | 282 | 14.121 | ||
| TIGRFAM | 62 | 338 | 277 | 5.20E-87 | ||
| PANTHER | 63 | 364 | 302 | 1.70E-128 | – | |
| PANTHER | 63 | 364 | 302 | 1.70E-128 | – | |
| CDD | 64 | 332 | 269 | 6.92E-106 | ||
| TMHMM | 69 | 91 | 23 | – | – | |
| Phobius | 71 | 90 | 20 | – | – | |
| Pfam | 77 | 325 | 249 | 6.50E-52 | ||
| Phobius | 91 | 95 | 5 | – | – | |
| TMHMM | 95 | 117 | 23 | – | – | |
| Phobius | 96 | 117 | 22 | – | – | |
| Phobius | 118 | 137 | 20 | – | – | |
| Phobius | 138 | 158 | 21 | – | – | |
| TMHMM | 138 | 160 | 23 | – | – | |
| Phobius | 159 | 163 | 5 | – | – | |
| TMHMM | 164 | 183 | 20 | – | – | |
| Phobius | 164 | 181 | 18 | – | – | |
| Phobius | 182 | 192 | 11 | – | – | |
| TMHMM | 190 | 209 | 20 | – | – | |
| Phobius | 193 | 210 | 18 | – | – | |
| Phobius | 211 | 215 | 5 | – | – | |
| Phobius | 216 | 240 | 25 | – | – | |
| TMHMM | 219 | 241 | 23 | – | – | |
| Phobius | 241 | 260 | 20 | – | – | |
| Phobius | 261 | 281 | 21 | – | – | |
| TMHMM | 262 | 281 | 20 | – | – | |
| Phobius | 282 | 286 | 5 | – | – | |
| TMHMM | 286 | 308 | 23 | – | – | |
| Phobius | 287 | 309 | 23 | – | – | |
| Phobius | 310 | 320 | 11 | – | – | |
| TMHMM | 321 | 338 | 18 | – | – | |
| Phobius | 321 | 338 | 18 | – | – | |
| Phobius | 339 | 407 | 69 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protoheme IX farnesyltransferase activity | Catalysis of the reaction: protoheme IX + (2E,6E)-farnesyl diphosphate + H2O = heme o + diphosphate. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transferase activity, transferring alkyl or aryl (other than methyl) groups | Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor). | ||
| Biological process | Heme O biosynthetic process | The chemical reactions and pathways resulting in the formation of heme O, a derivative of heme containing a 17-carbon hydroxyethylfarnesyl side chain at position 8 of the tetrapyrrole macrocycle. |
Expression pattern of Lj5g3v2291460.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2291460.1, powered by CORGI.
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