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Lj5g3v2300330.1

Overview

Field Value
Gene ID Lj5g3v2300330
Transcript ID Lj5g3v2300330.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like [Cicer arietinum] gi|502121892|ref|XP_004497481.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31140
1 258 258 2.40E-138 –
PANTHER
PTHR31140:SF13
1 258 258 2.40E-138 –
SUPERFAMILY
SSF54171
37 94 58 1.18E-13
IPR016177
Gene3D
G3DSA:3.30.730.10
37 92 56 2.20E-15
IPR001471
CDD
cd00018
37 94 58 3.28E-21
IPR001471
ProSiteProfiles
PS51032
37 92 56 16.41
IPR001471
SMART
SM00380
37 98 62 1.10E-17
IPR001471
Gene3D
G3DSA:2.40.330.10
154 257 104 7.60E-31
IPR015300
SUPERFAMILY
SSF101936
156 260 105 8.63E-27
IPR015300
CDD
cd10017
157 256 100 1.26E-24
IPR003340
Pfam
PF02362
159 257 99 1.70E-23
IPR003340
SMART
SM01019
159 275 117 2.00E-17
IPR003340
ProSiteProfiles
PS50863
159 278 120 10.926
IPR003340

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj5g3v2300330.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2300330.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.