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Lj6g3v0096480.1

Overview

Field Value
Gene ID Lj6g3v0096480
Transcript ID Lj6g3v0096480.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: 3-isopropylmalate dehydratase-like [Cicer arietinum] gi|502122527|ref|XP_004497788.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
24 43 20 – –
Gene3D
G3DSA:3.30.499.10
64 237 174 6.20E-26
IPR015931
SUPERFAMILY
SSF53732
66 509 444 1.31E-119
IPR001030
PANTHER
PTHR11670
67 510 444 1.70E-215
IPR015937
TIGRFAM
TIGR01343
70 507 438 2.60E-124
IPR006251
Pfam
PF00330
91 501 411 1.30E-73
IPR001030
CDD
cd01583
97 503 407 0
IPR033941
PRINTS
PR00415
192 205 14 1.10E-15
IPR001030
PRINTS
PR00415
206 221 16 1.10E-15
IPR001030
Gene3D
G3DSA:3.40.1060.10
240 343 104 2.60E-30
IPR015932
PRINTS
PR00415
268 281 14 1.10E-15
IPR001030
PRINTS
PR00415
282 295 14 1.10E-15
IPR001030
Gene3D
G3DSA:3.30.499.10
353 510 158 1.50E-51
IPR015931
PRINTS
PR00415
439 452 14 1.10E-15
IPR001030

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003861
Molecular function 3-isopropylmalate dehydratase activity Catalysis of the reaction: (2R,3S)-3-isopropylmalate = (2S)-2-isopropylmalate.
Subterm of
GO:0008652
Biological process Cellular amino acid biosynthetic process The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
Subterm of
GO:0016836
Molecular function Hydro-lyase activity Catalysis of the cleavage of a carbon-oxygen bond by elimination of water.
Subterm of
GO:0051539
Molecular function 4 iron, 4 sulfur cluster binding Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
Subterm of

Genome browser

LORE1 insertions 62

Expression data

Expression pattern

Expression pattern of Lj6g3v0096480.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0096480.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.