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Lj6g3v0184180.1

Overview

Field Value
Gene ID Lj6g3v0184180
Transcript ID Lj6g3v0184180.1
Lotus japonicus genome version MG20 v3.0
Description Serine/threonine protein kinase ATM [Medicago truncatula] gi|357440855|ref|XP_003590705.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22981:SF73
14 263 250 5.00E-242 –
PANTHER
PTHR22981
14 263 250 5.00E-242 –
MobiDBLite
mobidb-lite
47 88 42 – –
Gene3D
G3DSA:2.30.30.160
81 179 99 3.50E-23 –
SUPERFAMILY
SSF63748
82 189 108 8.42E-27 –
Pfam
PF00855
87 173 87 6.30E-17
IPR000313
SMART
SM00293
87 148 62 1.90E-08
IPR000313
CDD
cd05162
87 173 87 1.34E-28 –
ProSiteProfiles
PS50812
89 150 62 14.506
IPR000313
MobiDBLite
mobidb-lite
359 382 24 – –
PANTHER
PTHR22981:SF73
361 432 72 5.00E-242 –
PANTHER
PTHR22981
361 432 72 5.00E-242 –
MobiDBLite
mobidb-lite
417 437 21 – –
MobiDBLite
mobidb-lite
517 536 20 – –
MobiDBLite
mobidb-lite
550 620 71 – –
PANTHER
PTHR22981
599 707 109 5.00E-242 –
PANTHER
PTHR22981:SF73
599 707 109 5.00E-242 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj6g3v0184180.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0184180.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.