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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0528560 |
| Transcript ID | Lj6g3v0528560.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like [Cicer arietinum] gi|502140148|ref|XP_004504079.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 365 | 362 | 6.60E-263 | – | |
| PANTHER | 4 | 365 | 362 | 6.60E-263 | – | |
| SUPERFAMILY | 21 | 129 | 109 | 2.75E-93 | – | |
| Pfam | 23 | 360 | 338 | 4.80E-61 | ||
| ProSiteProfiles | 23 | 363 | 341 | 62.119 | ||
| CDD | 24 | 361 | 338 | 0 | – | |
| ProSitePatterns | 24 | 39 | 16 | – | ||
| MobiDBLite | 133 | 159 | 27 | – | – | |
| SUPERFAMILY | 167 | 361 | 195 | 2.75E-93 | – | |
| Gene3D | 179 | 246 | 68 | 1.30E-06 | – | |
| ProSitePatterns | 294 | 312 | 19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. | ||
| Molecular function | Thiol-dependent ubiquitinyl hydrolase activity | Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. |
Expression pattern of Lj6g3v0528560.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0528560.1, powered by CORGI.
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