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Lj6g3v0727740.1

Overview

Field Value
Gene ID Lj6g3v0727740
Transcript ID Lj6g3v0727740.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like [Cicer arietinum] gi|502086655|ref|XP_004488284.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11800
40 199 160 7.40E-171 –
PANTHER
PTHR11800:SF13
40 199 160 7.40E-171 –
Gene3D
G3DSA:3.30.1360.10
77 117 41 6.00E-50 –
SUPERFAMILY
SSF55257
79 122 44 3.53E-34
IPR009025
CDD
cd07032
81 385 305 3.02E-150
IPR033901
SMART
SM00662
92 385 294 5.00E-105
IPR011263
Pfam
PF01193
94 379 286 4.90E-22
IPR009025
ProSitePatterns
PS00446
106 146 41 –
IPR001514
SUPERFAMILY
SSF56553
117 203 87 2.88E-30
IPR011262
Gene3D
G3DSA:2.170.120.12
118 267 150 6.30E-34
IPR011262
Pfam
PF01000
124 270 147 3.50E-23
IPR011262
PANTHER
PTHR11800:SF13
220 387 168 7.40E-171 –
PANTHER
PTHR11800
220 387 168 7.40E-171 –
SUPERFAMILY
SSF56553
230 271 42 2.88E-30
IPR011262
Gene3D
G3DSA:3.30.1360.10
268 386 119 6.00E-50 –
SUPERFAMILY
SSF55257
298 386 89 3.53E-34
IPR009025

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003899
Molecular function DNA-directed 5'-3' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
Subterm of
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj6g3v0727740.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0727740.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.