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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR009025
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 14 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.670s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0213949.1
n.a. PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2-like [Cicer arietinum] gi|502102259|ref|XP_004492017.1| chr0 108249508 108252016 -
3 domain predictions
2 GO terms
Lj0g3v0333049.1
n.a. PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2-like [Cicer arietinum] gi|502102259|ref|XP_004492017.1| chr0 174280099 174282290 -
3 domain predictions
2 GO terms
Lj0g3v0333049.2
n.a. PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2-like [Cicer arietinum] gi|502102259|ref|XP_004492017.1| chr0 174280099 174283340 -
3 domain predictions
2 GO terms
Lj0g3v0333059.1
n.a. n.a. chr0 174280250 174283340 +
2 domain predictions
2 GO terms
Lj3g3v3690050.1
n.a. PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Glycine max] gi|356531671|ref|XP_003534400.1| chr3 44852099 44853758 -
3 domain predictions
2 GO terms
Lj4g3v0654400.1
n.a. PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like [Cicer arietinum] gi|502143329|ref|XP_004505300.1| chr4 10510566 10514344 +
3 domain predictions
2 GO terms
Lj6g3v0727740.1
n.a. PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like [Cicer arietinum] gi|502086655|ref|XP_004488284.1| chr6 6862748 6867485 -
3 domain predictions
2 GO terms
Lj6g3v1752970.1
n.a. PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2-like [Cicer arietinum] gi|502102259|ref|XP_004492017.1| chr6 19650936 19654968 -
3 domain predictions
2 GO terms
Ljchlorog3v0010820.1
n.a. RNA polymerase alpha subunit [Lotus japonicus] gi|13518470|ref|NP_084829.1| chloro 75821 77216 -
3 domain predictions
2 GO terms
LotjaGi1g1v0525600.1
n.a. DNA-directed RNA polymerase; TAIR: AT2G29540.1 RNApolymerase 14 kDa subunit; Swiss-Prot: sp|P97304|RPAC2_MOUSE DNA-directed RNA polymerases I and III subunit RPAC2; TrEMBL-Plants: tr|I3S968|I3S968_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0525600 LjG1.1_chr1 105255692 105258913 +
2 domain predictions
2 GO terms
LotjaGi3g1v0550300.1
n.a. DNA-directed RNA polymerase; TAIR: AT3G52090.1 DNA-directed RNA polymerase, RBP11-like protein; Swiss-Prot: sp|Q38859|NRPBB_ARATH DNA-directed RNA polymerases II, IV and V subunit 11; TrEMBL-Plants: tr|I3T213|I3T213_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0550300 LjG1.1_chr3 96722653 96724612 -
2 domain predictions
2 GO terms
LotjaGi3g1v0550300.2
n.a. DNA-directed RNA polymerase; TAIR: AT3G52090.1 DNA-directed RNA polymerase, RBP11-like protein; Swiss-Prot: sp|Q38859|NRPBB_ARATH DNA-directed RNA polymerases II, IV and V subunit 11; TrEMBL-Plants: tr|I3T213|I3T213_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0550300 LjG1.1_chr3 96723572 96724512 -
2 domain predictions
2 GO terms
LotjaGi3g1v0550300.3
n.a. DNA-directed RNA polymerase; TAIR: AT3G52090.1 DNA-directed RNA polymerase, RBP11-like protein; Swiss-Prot: sp|Q38859|NRPBB_ARATH DNA-directed RNA polymerases II, IV and V subunit 11; TrEMBL-Plants: tr|I3T213|I3T213_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0550300 LjG1.1_chr3 96723772 96724512 -
2 domain predictions
2 GO terms
LotjaGi6g1v0284900.1
n.a. DNA-directed RNA polymerase; TAIR: AT2G29540.1 RNApolymerase 14 kDa subunit; Swiss-Prot: sp|P97304|RPAC2_MOUSE DNA-directed RNA polymerases I and III subunit RPAC2; TrEMBL-Plants: tr|I3S968|I3S968_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0284900 LjG1.1_chr6 60133026 60137218 -
2 domain predictions
2 GO terms