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Lj6g3v0920290.1

Overview

Field	Value
Gene ID	Lj6g3v0920290
Transcript ID	Lj6g3v0920290.1
Lotus japonicus genome version	MG20 v3.0
Description	NBS resistance protein [Populus trichocarpa] gi\|224114113\|ref\|XP_002316671.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR23155 View details on PTHR23155 Search for proteins/transripts with this domain View external data on PTHR23155	139	260	122	7.60E-25	–
SUPERFAMILY	SSF52540 View details on SSF52540 Search for proteins/transripts with this domain View external data on SSF52540	141	367	227	3.89E-34	IPR027417 Show description in modal box View details on IPR027417 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00931 View details on PF00931 Search for proteins/transripts with this domain View external data on PF00931	143	365	223	1.10E-27	IPR002182 Show description in modal box View details on IPR002182 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.300 View details on G3DSA:3.40.50.300 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.300	150	267	118	6.30E-09	IPR027417 Show description in modal box View details on IPR027417 Search for proteins/transripts with this domain View on EBI InterPro Service
PRINTS	PR00364 View details on PR00364 Search for proteins/transripts with this domain View external data on PR00364	160	175	16	8.80E-13	–
PRINTS	PR00364 View details on PR00364 Search for proteins/transripts with this domain View external data on PR00364	240	254	15	8.80E-13	–
PANTHER	PTHR23155 View details on PTHR23155 Search for proteins/transripts with this domain View external data on PTHR23155	276	362	87	7.60E-25	–
PRINTS	PR00364 View details on PR00364 Search for proteins/transripts with this domain View external data on PR00364	351	365	15	8.80E-13	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0043531 View details of GO:0043531 AmiGO InterPro QuickGO	Molecular function	ADP binding	Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.	Subterm of View details of GO:0032559 View details of GO:0043168

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj6g3v0920290.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0920290.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.