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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0935870 |
| Transcript ID | Lj6g3v0935870.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable polygalacturonase-like [Glycine max] gi|356567484|ref|XP_003551949.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 17 | 17 | – | – | |
| Phobius | 1 | 1 | 1 | – | – | |
| SignalP | 1 | 17 | 17 | – | – | |
| Phobius | 2 | 12 | 11 | – | – | |
| Phobius | 13 | 17 | 5 | – | – | |
| Phobius | 18 | 440 | 423 | – | – | |
| SUPERFAMILY | 28 | 426 | 399 | 2.23E-100 | ||
| PANTHER | 29 | 435 | 407 | 0 | – | |
| PANTHER | 29 | 435 | 407 | 0 | – | |
| Gene3D | 30 | 414 | 385 | 4.40E-108 | ||
| Pfam | 131 | 412 | 282 | 2.70E-41 | ||
| SMART | 202 | 228 | 27 | 300 | ||
| SMART | 229 | 261 | 33 | 930 | ||
| SMART | 263 | 284 | 22 | 1000 | ||
| SMART | 290 | 311 | 22 | 950 | ||
| SMART | 319 | 340 | 22 | 480 | ||
| SMART | 353 | 373 | 21 | 6700 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of Lj6g3v0935870.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0935870.1, powered by CORGI.
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