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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1038840 |
| Transcript ID | Lj6g3v1038840.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Cellular nucleic acid-binding protein [Medicago truncatula] gi|357493439|ref|XP_003617008.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 35 | 35 | – | – | |
| PANTHER | 123 | 418 | 296 | 1.70E-155 | – | |
| PANTHER | 123 | 418 | 296 | 1.70E-155 | – | |
| Coils | 123 | 143 | 21 | – | – | |
| SUPERFAMILY | 171 | 213 | 43 | 2.32E-10 | ||
| SMART | 175 | 191 | 17 | 0.0022 | ||
| Pfam | 175 | 190 | 16 | 4.50E-05 | ||
| ProSiteProfiles | 176 | 189 | 14 | 10.114 | ||
| Gene3D | 176 | 212 | 37 | 3.40E-11 | ||
| Pfam | 197 | 211 | 15 | 9.70E-04 | ||
| SMART | 197 | 213 | 17 | 0.015 | ||
| ProSiteProfiles | 198 | 211 | 14 | 9.158 | ||
| SUPERFAMILY | 215 | 260 | 46 | 2.82E-07 | ||
| SMART | 216 | 232 | 17 | 7.30E-04 | ||
| Gene3D | 216 | 259 | 44 | 5.50E-08 | ||
| Pfam | 217 | 232 | 16 | 3.80E-04 | ||
| ProSiteProfiles | 217 | 232 | 16 | 9.916 | ||
| SMART | 243 | 259 | 17 | 0.38 | ||
| Gene3D | 267 | 301 | 35 | 4.10E-05 | ||
| SUPERFAMILY | 287 | 339 | 53 | 4.49E-09 | ||
| SMART | 294 | 310 | 17 | 0.23 | ||
| ProSiteProfiles | 295 | 310 | 16 | 8.911 | ||
| Gene3D | 302 | 339 | 38 | 5.30E-12 | ||
| Pfam | 323 | 339 | 17 | 2.90E-07 | ||
| SMART | 323 | 339 | 17 | 1.00E-05 | ||
| ProSiteProfiles | 324 | 339 | 16 | 10.938 | ||
| MobiDBLite | 348 | 468 | 121 | – | – | |
| PANTHER | 434 | 549 | 116 | 1.70E-155 | – | |
| PANTHER | 434 | 549 | 116 | 1.70E-155 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj6g3v1038840.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1038840.1, powered by CORGI.
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