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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1088940 |
| Transcript ID | Lj6g3v1088940.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: sugar transport protein 7-like [Glycine max] gi|356556596|ref|XP_003546610.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | – | – | |
| PANTHER | 10 | 501 | 492 | 0 | – | |
| PANTHER | 10 | 501 | 492 | 0 | – | |
| SUPERFAMILY | 21 | 484 | 464 | 3.53E-55 | ||
| TIGRFAM | 22 | 484 | 463 | 1.80E-114 | ||
| Phobius | 23 | 43 | 21 | – | – | |
| TMHMM | 25 | 47 | 23 | – | – | |
| ProSiteProfiles | 30 | 477 | 448 | 45.215 | ||
| Pfam | 31 | 488 | 458 | 3.70E-122 | ||
| PRINTS | 38 | 48 | 11 | 3.50E-29 | ||
| Phobius | 44 | 84 | 41 | – | – | |
| Gene3D | 46 | 230 | 185 | 8.50E-22 | – | |
| Phobius | 85 | 103 | 19 | – | – | |
| TMHMM | 85 | 107 | 23 | – | – | |
| CDD | 85 | 474 | 390 | 3.30E-21 | ||
| Phobius | 104 | 114 | 11 | – | – | |
| TMHMM | 114 | 136 | 23 | – | – | |
| Phobius | 115 | 134 | 20 | – | – | |
| Phobius | 135 | 139 | 5 | – | – | |
| Phobius | 140 | 161 | 22 | – | – | |
| PRINTS | 140 | 159 | 20 | 3.50E-29 | ||
| TMHMM | 140 | 162 | 23 | – | – | |
| ProSitePatterns | 145 | 170 | 26 | – | ||
| Phobius | 162 | 172 | 11 | – | – | |
| TMHMM | 169 | 191 | 23 | – | – | |
| Phobius | 173 | 191 | 19 | – | – | |
| Phobius | 192 | 202 | 11 | – | – | |
| TMHMM | 201 | 223 | 23 | – | – | |
| Phobius | 203 | 224 | 22 | – | – | |
| Phobius | 225 | 285 | 61 | – | – | |
| TMHMM | 285 | 307 | 23 | – | – | |
| Gene3D | 286 | 478 | 193 | 4.90E-13 | – | |
| Phobius | 286 | 310 | 25 | – | – | |
| PRINTS | 296 | 306 | 11 | 3.50E-29 | ||
| Phobius | 311 | 321 | 11 | – | – | |
| TMHMM | 322 | 344 | 23 | – | – | |
| Phobius | 322 | 344 | 23 | – | – | |
| ProSitePatterns | 340 | 357 | 18 | – | ||
| Phobius | 345 | 350 | 6 | – | – | |
| Phobius | 351 | 373 | 23 | – | – | |
| TMHMM | 351 | 373 | 23 | – | – | |
| Phobius | 374 | 384 | 11 | – | – | |
| TMHMM | 383 | 405 | 23 | – | – | |
| Phobius | 385 | 405 | 21 | – | – | |
| PRINTS | 390 | 411 | 22 | 3.50E-29 | ||
| Phobius | 406 | 425 | 20 | – | – | |
| PRINTS | 413 | 425 | 13 | 3.50E-29 | ||
| Phobius | 426 | 446 | 21 | – | – | |
| TMHMM | 426 | 448 | 23 | – | – | |
| Phobius | 447 | 451 | 5 | – | – | |
| TMHMM | 452 | 474 | 23 | – | – | |
| Phobius | 452 | 473 | 22 | – | – | |
| Phobius | 474 | 506 | 33 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj6g3v1088940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1088940.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.