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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1093730 |
| Transcript ID | Lj6g3v1093730.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Carbohydrate transporter/sugar porter [Medicago truncatula] gi|357450525|ref|XP_003595539.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 369 | 369 | 2.80E-295 | – | |
| Phobius | 1 | 28 | 28 | – | – | |
| PANTHER | 1 | 369 | 369 | 2.80E-295 | – | |
| SUPERFAMILY | 19 | 359 | 341 | 9.81E-70 | ||
| TIGRFAM | 21 | 364 | 344 | 2.90E-93 | ||
| Gene3D | 23 | 218 | 196 | 7.90E-27 | – | |
| ProSiteProfiles | 29 | 539 | 511 | 55.339 | ||
| Phobius | 29 | 54 | 26 | – | – | |
| TMHMM | 30 | 52 | 23 | – | – | |
| Pfam | 30 | 364 | 335 | 7.40E-95 | ||
| CDD | 31 | 342 | 312 | 9.57E-29 | ||
| PRINTS | 37 | 47 | 11 | 2.70E-26 | ||
| Phobius | 55 | 65 | 11 | – | – | |
| Phobius | 66 | 86 | 21 | – | – | |
| TMHMM | 67 | 89 | 23 | – | – | |
| Phobius | 87 | 97 | 11 | – | – | |
| Phobius | 98 | 117 | 20 | – | – | |
| TMHMM | 98 | 117 | 20 | – | – | |
| Phobius | 118 | 122 | 5 | – | – | |
| TMHMM | 122 | 144 | 23 | – | – | |
| PRINTS | 123 | 142 | 20 | 2.70E-26 | ||
| Phobius | 123 | 144 | 22 | – | – | |
| ProSitePatterns | 128 | 153 | 26 | – | ||
| Phobius | 145 | 155 | 11 | – | – | |
| Phobius | 156 | 178 | 23 | – | – | |
| TMHMM | 157 | 179 | 23 | – | – | |
| Phobius | 179 | 183 | 5 | – | – | |
| Phobius | 184 | 206 | 23 | – | – | |
| TMHMM | 184 | 206 | 23 | – | – | |
| Phobius | 207 | 271 | 65 | – | – | |
| TMHMM | 271 | 293 | 23 | – | – | |
| Phobius | 272 | 293 | 22 | – | – | |
| Gene3D | 274 | 361 | 88 | 1.20E-23 | – | |
| PRINTS | 282 | 292 | 11 | 2.70E-26 | ||
| Phobius | 294 | 307 | 14 | – | – | |
| TMHMM | 308 | 330 | 23 | – | – | |
| Phobius | 308 | 332 | 25 | – | – | |
| Phobius | 333 | 338 | 6 | – | – | |
| TMHMM | 339 | 361 | 23 | – | – | |
| Phobius | 339 | 358 | 20 | – | – | |
| Phobius | 359 | 447 | 89 | – | – | |
| PANTHER | 438 | 575 | 138 | 2.80E-295 | – | |
| PANTHER | 438 | 575 | 138 | 2.80E-295 | – | |
| Pfam | 444 | 549 | 106 | 9.90E-24 | ||
| SUPERFAMILY | 445 | 547 | 103 | 9.81E-70 | ||
| Gene3D | 445 | 545 | 101 | 1.20E-23 | – | |
| Phobius | 448 | 472 | 25 | – | – | |
| TMHMM | 450 | 472 | 23 | – | – | |
| PRINTS | 451 | 472 | 22 | 2.70E-26 | ||
| Phobius | 473 | 483 | 11 | – | – | |
| PRINTS | 474 | 486 | 13 | 2.70E-26 | ||
| TMHMM | 479 | 501 | 23 | – | – | |
| Phobius | 484 | 505 | 22 | – | – | |
| Phobius | 506 | 510 | 5 | – | – | |
| Phobius | 511 | 535 | 25 | – | – | |
| TMHMM | 511 | 533 | 23 | – | – | |
| Phobius | 536 | 577 | 42 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj6g3v1093730.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1093730.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.