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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1176170 |
| Transcript ID | Lj6g3v1176170.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable polygalacturonase-like [Cicer arietinum] gi|502086076|ref|XP_004488101.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | – | – | |
| Phobius | 21 | 38 | 18 | – | – | |
| TMHMM | 21 | 38 | 18 | – | – | |
| Phobius | 39 | 482 | 444 | – | – | |
| SUPERFAMILY | 55 | 455 | 401 | 1.09E-108 | ||
| Gene3D | 59 | 443 | 385 | 7.40E-121 | ||
| PANTHER | 61 | 482 | 422 | 4.30E-271 | – | |
| PANTHER | 61 | 482 | 422 | 4.30E-271 | – | |
| Pfam | 159 | 441 | 283 | 9.80E-50 | ||
| SMART | 231 | 258 | 28 | 31 | ||
| SMART | 259 | 280 | 22 | 160 | ||
| SMART | 293 | 315 | 23 | 3 | ||
| SMART | 321 | 342 | 22 | 36 | ||
| SMART | 350 | 371 | 22 | 210 | ||
| SMART | 384 | 406 | 23 | 6700 | ||
| SMART | 411 | 432 | 22 | 920 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of Lj6g3v1176170.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1176170.2, powered by CORGI.
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