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Lj6g3v1177290.1

Overview

Field	Value
Gene ID	Lj6g3v1177290
Transcript ID	Lj6g3v1177290.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: pentatricopeptide repeat-containing protein At5g43790-like [Glycine max] gi\|356534289\|ref\|XP_003535689.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR24015 View details on PTHR24015 Search for proteins/transripts with this domain View external data on PTHR24015	20	297	278	6.40E-136	–
PANTHER	PTHR24015:SF685 View details on PTHR24015:SF685 Search for proteins/transripts with this domain View external data on PTHR24015:SF685	20	297	278	6.40E-136	–
Pfam	PF13041 View details on PF13041 Search for proteins/transripts with this domain View external data on PF13041	69	119	51	8.90E-09	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01535 View details on PF01535 Search for proteins/transripts with this domain View external data on PF01535	262	286	25	0.12	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj6g3v1177290.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1177290.1, powered by CORGI.

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