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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1318700 |
| Transcript ID | Lj6g3v1318700.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: calcium-transporting ATPase 10, plasma membrane-type-like [Glycine max] gi|356562048|ref|XP_003549287.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 25 | 25 | – | – | |
| Phobius | 1 | 176 | 176 | – | – | |
| Pfam | 20 | 63 | 44 | 5.10E-17 | ||
| PANTHER | 29 | 574 | 546 | 4.00E-283 | – | |
| PANTHER | 29 | 574 | 546 | 4.00E-283 | – | |
| SMART | 128 | 202 | 75 | 9.00E-04 | ||
| SUPERFAMILY | 130 | 248 | 119 | 1.96E-52 | – | |
| Pfam | 131 | 197 | 67 | 1.10E-11 | ||
| Gene3D | 139 | 182 | 44 | 4.40E-36 | ||
| TMHMM | 174 | 196 | 23 | – | – | |
| Phobius | 177 | 202 | 26 | – | – | |
| Gene3D | 183 | 242 | 60 | 5.20E-04 | ||
| Phobius | 203 | 213 | 11 | – | – | |
| TMHMM | 211 | 230 | 20 | – | – | |
| Phobius | 214 | 233 | 20 | – | – | |
| PRINTS | 215 | 235 | 21 | 3.20E-08 | – | |
| TIGRFAM | 217 | 385 | 169 | 4.60E-18 | ||
| Pfam | 217 | 463 | 247 | 3.40E-45 | ||
| Phobius | 234 | 363 | 130 | – | – | |
| Gene3D | 243 | 347 | 105 | 4.40E-36 | ||
| SUPERFAMILY | 250 | 345 | 96 | 4.45E-26 | – | |
| PRINTS | 296 | 310 | 15 | 2.70E-09 | – | |
| SUPERFAMILY | 348 | 467 | 120 | 1.96E-52 | – | |
| TMHMM | 363 | 385 | 23 | – | – | |
| Phobius | 364 | 388 | 25 | – | – | |
| Phobius | 389 | 417 | 29 | – | – | |
| TIGRFAM | 412 | 501 | 90 | 7.20E-23 | ||
| TMHMM | 418 | 440 | 23 | – | – | |
| Phobius | 418 | 444 | 27 | – | – | |
| Phobius | 445 | 574 | 130 | – | – | |
| Gene3D | 462 | 573 | 112 | 1.20E-22 | ||
| PRINTS | 465 | 486 | 22 | 3.20E-08 | – | |
| PRINTS | 472 | 486 | 15 | 2.70E-09 | – | |
| ProSitePatterns | 474 | 480 | 7 | – | ||
| SUPERFAMILY | 478 | 573 | 96 | 6.32E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Calmodulin binding | Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj6g3v1318700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1318700.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.