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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1655350 |
| Transcript ID | Lj6g3v1655350.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: U3 small nucleolar RNA-interacting protein 2-like isoform 1 [Glycine max] gi|356533031|ref|XP_003535072.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 108 | 108 | – | – | |
| PANTHER | 4 | 500 | 497 | 9.50E-217 | – | |
| PANTHER | 4 | 500 | 497 | 9.50E-217 | – | |
| SMART | 135 | 174 | 40 | 0.0045 | ||
| Gene3D | 141 | 474 | 334 | 2.50E-50 | ||
| SUPERFAMILY | 141 | 366 | 226 | 1.28E-47 | ||
| ProSiteProfiles | 142 | 183 | 42 | 12.447 | ||
| ProSiteProfiles | 142 | 367 | 226 | 32.588 | ||
| Pfam | 145 | 174 | 30 | 0.25 | ||
| SMART | 196 | 235 | 40 | 5.00E-04 | ||
| ProSiteProfiles | 203 | 244 | 42 | 12.547 | ||
| Pfam | 207 | 235 | 29 | 5.30E-05 | ||
| ProSitePatterns | 222 | 236 | 15 | – | ||
| PRINTS | 222 | 236 | 15 | 5.00E-06 | ||
| SMART | 238 | 277 | 40 | 1.80E-08 | ||
| Pfam | 241 | 277 | 37 | 1.40E-05 | ||
| ProSiteProfiles | 245 | 286 | 42 | 14.519 | ||
| ProSitePatterns | 264 | 278 | 15 | – | ||
| PRINTS | 264 | 278 | 15 | 5.00E-06 | ||
| SMART | 280 | 318 | 39 | 0.3 | ||
| SMART | 320 | 358 | 39 | 0.27 | ||
| Pfam | 327 | 357 | 31 | 0.0048 | ||
| PRINTS | 345 | 359 | 15 | 5.00E-06 | ||
| SUPERFAMILY | 401 | 473 | 73 | 1.28E-47 | ||
| SMART | 403 | 438 | 36 | 0.49 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v1655350.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1655350.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.