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Lj6g3v1692520.1

Overview

Field Value
Gene ID Lj6g3v1692520
Transcript ID Lj6g3v1692520.1
Lotus japonicus genome version MG20 v3.0
Description Protein argonaute [Medicago truncatula] gi|357448367|ref|XP_003594459.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 98 98 – –
PANTHER
PTHR22891
4 66 63 0 –
PANTHER
PTHR22891:SF4
4 66 63 0 –
PANTHER
PTHR22891
136 997 862 0 –
PANTHER
PTHR22891:SF4
136 997 862 0 –
Pfam
PF16486
162 297 136 1.80E-17
IPR032474
SMART
SM01163
306 359 54 2.20E-11
IPR014811
Pfam
PF08699
307 358 52 1.80E-09
IPR014811
Gene3D
G3DSA:2.170.260.10
355 479 125 7.20E-24 –
SUPERFAMILY
SSF101690
355 514 160 4.71E-32
IPR003100
SMART
SM00949
360 498 139 1.20E-04
IPR003100
CDD
cd02846
360 475 116 1.27E-20 –
ProSiteProfiles
PS50821
360 476 117 19.575
IPR003100
Pfam
PF02170
363 485 123 1.40E-20
IPR003100
Pfam
PF16488
503 549 47 1.30E-07
IPR032472
CDD
cd04657
524 957 434 8.03E-161 –
Gene3D
G3DSA:3.40.50.2300
540 716 177 7.60E-11 –
SUPERFAMILY
SSF53098
652 959 308 1.26E-75
IPR012337
ProSiteProfiles
PS50822
660 959 300 36.717
IPR003165
SMART
SM00950
660 958 299 3.30E-103
IPR003165
Pfam
PF02171
661 955 295 3.50E-84
IPR003165
Gene3D
G3DSA:3.30.420.10
733 951 219 3.00E-18
IPR012337

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj6g3v1692520.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1692520.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.