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Lj6g3v1721630.1

Overview

Field Value
Gene ID Lj6g3v1721630
Transcript ID Lj6g3v1721630.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: translation initiation factor IF-2-like [Cicer arietinum] gi|502079713|ref|XP_004486345.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 33 33 – –
Coils
Coil
4 25 22 – –
PANTHER
PTHR22814
16 189 174 3.50E-119 –
PANTHER
PTHR22814:SF94
16 189 174 3.50E-119 –
Gene3D
G3DSA:3.30.70.100
32 95 64 2.20E-14 –
SUPERFAMILY
SSF55008
33 94 62 1.57E-11
IPR006121
CDD
cd00371
33 94 62 8.44E-11
IPR006121
Pfam
PF00403
34 87 54 1.50E-13
IPR006121
ProSiteProfiles
PS50846
38 87 50 9.168
IPR006121
MobiDBLite
mobidb-lite
55 75 21 – –
MobiDBLite
mobidb-lite
87 123 37 – –
SUPERFAMILY
SSF55008
126 183 58 6.94E-13
IPR006121
Gene3D
G3DSA:3.30.70.100
127 190 64 1.70E-17 –
Pfam
PF00403
130 180 51 3.40E-12
IPR006121
CDD
cd00371
134 189 56 3.27E-09
IPR006121
ProSiteProfiles
PS50846
134 180 47 10.786
IPR006121
MobiDBLite
mobidb-lite
187 241 55 – –
Coils
Coil
188 228 41 – –
PANTHER
PTHR22814:SF94
233 263 31 3.50E-119 –
PANTHER
PTHR22814
233 263 31 3.50E-119 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0030001
Biological process Metal ion transport The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj6g3v1721630.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1721630.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.