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Lj6g3v1872560.1

Overview

Field Value
Gene ID Lj6g3v1872560
Transcript ID Lj6g3v1872560.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: 5'-adenylylsulfate reductase 1, chloroplastic-like [Cicer arietinum] gi|502079145|ref|XP_004486168.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP
SignalP-TM_GRAM_POSITIVE
1 16 16 – –
TIGRFAM
TIGR00424
6 470 465 1.20E-264
IPR004508
PANTHER
PTHR23293
37 353 317 2.30E-186 –
PANTHER
PTHR23293:SF11
37 353 317 2.30E-186 –
Gene3D
G3DSA:3.40.50.620
85 294 210 1.00E-48
IPR014729
SUPERFAMILY
SSF52402
91 286 196 1.26E-39 –
CDD
cd01713
117 291 175 1.40E-49
IPR002500
Pfam
PF01507
124 297 174 8.50E-41
IPR002500
ProSiteProfiles
PS51352
336 470 135 10.946
IPR013766
CDD
cd02993
359 466 108 1.78E-60 –
Gene3D
G3DSA:3.40.30.10
359 467 109 6.90E-18
IPR012336
SUPERFAMILY
SSF52833
359 467 109 1.51E-21
IPR012336
Pfam
PF00085
373 466 94 1.80E-10
IPR013766

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0016671
Molecular function Oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces disulfide.
Subterm of
GO:0019419
Biological process Sulfate reduction The chemical reactions and pathways resulting in the reduction of sulfate to another sulfur-containing ion or compound such as hydrogen sulfide, adenosine-phosphosulfate (APS) or thiosulfate.
Subterm of
GO:0045454
Biological process Cell redox homeostasis Any process that maintains the redox environment of a cell or compartment within a cell.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj6g3v1872560.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1872560.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.