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Lj6g3v1887870.1

Overview

Field Value
Gene ID Lj6g3v1887870
Transcript ID Lj6g3v1887870.1
Lotus japonicus genome version MG20 v3.0
Description Eukaryotic translation initiation factor 2 gamma subunit, GAMMA isoform 1 [Theobroma cacao] gi|508714650|gb|EOY06547.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23115:SF164
16 83 68 5.30E-98 –
PANTHER
PTHR23115
16 83 68 5.30E-98 –
SUPERFAMILY
SSF52540
23 81 59 3.05E-31
IPR027417
Gene3D
G3DSA:3.40.50.300
24 203 180 1.70E-54
IPR027417
ProSiteProfiles
PS51722
30 204 175 27.736
IPR000795
Pfam
PF00009
32 194 163 2.30E-20 –
CDD
cd01888
33 203 171 5.22E-104 –
PRINTS
PR00315
34 47 14 1.50E-12
IPR000795
SUPERFAMILY
SSF52540
120 202 83 3.05E-31
IPR027417
PANTHER
PTHR23115
120 203 84 5.30E-98 –
PANTHER
PTHR23115:SF164
120 203 84 5.30E-98 –
PRINTS
PR00315
123 133 11 1.50E-12
IPR000795
PRINTS
PR00315
139 150 12 1.50E-12
IPR000795
PRINTS
PR00315
177 186 10 1.50E-12
IPR000795

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj6g3v1887870.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1887870.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.