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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR23115
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 77 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.020s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0069129.1
n.a. n.a. chr0 24876359 24878394 +
1 domain prediction
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Lj0g3v0069139.1
n.a. elongation factor 1-alpha (EF1-a) [Cicer arietinum] gi|3319882|emb|CAA06245.1| chr0 24876556 24878645 -
1 domain prediction
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Lj0g3v0069149.1
n.a. elongation factor 1 [Elaeis guineensis] gi|353441128|gb|AEQ94148.1| chr0 24877500 24880233 -
1 domain prediction
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Lj0g3v0093839.1
n.a. translation elongation factor 1-alpha, partial [Camellia oleifera] gi|469469452|gb|AGH32904.1| chr0 39386302 39386595 +
1 domain prediction
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Lj0g3v0212609.1
n.a. AT1G56070 [Arabidopsis thaliana] gi|227206158|dbj|BAH57134.1| chr0 107341959 107342592 +
1 domain prediction
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Lj0g3v0212619.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356556977|ref|XP_003546795.1| chr0 107342642 107342822 +
1 domain prediction
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Lj0g3v0248479.1
n.a. PREDICTED: eukaryotic translation initiation factor 2 subunit 3-like isoform X1 [Cicer arietinum] gi|502089135|ref|XP_004488827.1| chr0 128801369 128805462 -
1 domain prediction
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Lj0g3v0270919.1
n.a. PREDICTED: elongation factor G, chloroplastic-like [Glycine max] gi|356563292|ref|XP_003549898.1| chr0 140309870 140314217 +
1 domain prediction
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Lj0g3v0281329.1
n.a. PREDICTED: GTP-binding protein TypA/BipA homolog [Cicer arietinum] gi|502143941|ref|XP_004505523.1| chr0 145851275 145866261 +
1 domain prediction
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Lj0g3v0318019.1
n.a. PREDICTED: eukaryotic translation initiation factor 2 subunit 3 [Vitis vinifera] gi|225465708|ref|XP_002273799.1| chr0 166097387 166099517 +
1 domain prediction
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Lj0g3v0341909.1
n.a. PREDICTED: elongation factor G, mitochondrial-like [Cicer arietinum] gi|502166590|ref|XP_004513932.1| chr0 179235132 179238892 -
1 domain prediction
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Lj0g3v0341919.1
n.a. PREDICTED: elongation factor G, mitochondrial-like [Glycine max] gi|356541316|ref|XP_003539124.1| chr0 179240705 179246839 -
1 domain prediction
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Lj0g3v0344719.1
n.a. Eukaryotic translation initiation factor 2 gamma subunit, GAMMA isoform 3 [Theobroma cacao] gi|508714652|gb|EOY06549.1| chr0 180904297 180904737 +
1 domain prediction
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Lj0g3v0344729.1
n.a. n.a. chr0 180904363 180904870 +
1 domain prediction
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Lj0g3v0344739.1
n.a. n.a. chr0 180904363 180904948 +
1 domain prediction
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Lj0g3v0344749.1
n.a. PREDICTED: eukaryotic translation initiation factor 2 subunit 3-like isoform X1 [Cicer arietinum] gi|502089135|ref|XP_004488827.1| chr0 180904840 180905596 +
1 domain prediction
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Lj0g3v0344769.1
n.a. PREDICTED: eukaryotic translation initiation factor 2 subunit 3 [Glycine max] gi|356525780|ref|XP_003531501.1| chr0 180905578 180906345 +
1 domain prediction
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Lj1g3v0296910.1
n.a. PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max] gi|356513781|ref|XP_003525588.1| chr1 3534273 3536548 +
1 domain prediction
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Lj1g3v0296920.1
n.a. PREDICTED: elongation factor Tu, chloroplastic-like isoform 1 [Vitis vinifera] gi|225452282|ref|XP_002271032.1| chr1 3535434 3537275 +
1 domain prediction
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Lj1g3v1353680.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356525774|ref|XP_003531498.1| chr1 16105759 16110082 +
1 domain prediction
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Lj1g3v1380860.1
n.a. PREDICTED: translation factor GUF1 homolog, chloroplastic-like [Cicer arietinum] gi|502137208|ref|XP_004503008.1| chr1 16656786 16667427 -
1 domain prediction
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Lj1g3v2953650.1
n.a. PREDICTED: translation factor GUF1 homolog, mitochondrial-like [Glycine max] gi|356530066|ref|XP_003533605.1| chr1 33587836 33593166 -
1 domain prediction
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Lj1g3v3690420.1
n.a. PREDICTED: elongation factor 1-alpha-like isoform 1 [Glycine max] gi|356558807|ref|XP_003547694.1| chr1 42579735 42582487 +
1 domain prediction
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Lj1g3v3975720.1
n.a. PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1-like [Cicer arietinum] gi|502123462|ref|XP_004498119.1| chr1 46969692 46976329 -
1 domain prediction
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Lj1g3v4408630.1
n.a. PREDICTED: elongation factor Tu, mitochondrial-like [Glycine max] gi|356572160|ref|XP_003554238.1| chr1 51422362 51426506 -
1 domain prediction
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Lj1g3v4647640.1
n.a. n.a. chr1 55242751 55247465 -
1 domain prediction
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Lj1g3v4808860.1
n.a. PREDICTED: translation initiation factor IF-2-like isoform X1 [Cicer arietinum] gi|502154667|ref|XP_004509778.1| chr1 58071813 58078537 -
1 domain prediction
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Lj2g3v0237250.1
n.a. PREDICTED: elongation factor 1-alpha-like [Cicer arietinum] gi|502091438|ref|XP_004489551.1| chr2 4065555 4068074 -
1 domain prediction
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Lj2g3v0690370.1
n.a. PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like [Glycine max] gi|356527880|ref|XP_003532534.1| chr2 10972367 10981079 +
1 domain prediction
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Lj2g3v0690370.2
n.a. PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like [Glycine max] gi|356527880|ref|XP_003532534.1| chr2 10972367 10981613 +
1 domain prediction
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Lj3g3v0965560.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356525774|ref|XP_003531498.1| chr3 12666294 12670036 +
1 domain prediction
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Lj3g3v0965570.1
n.a. Elongation factor EF-2 [Medicago truncatula] gi|357451779|ref|XP_003596166.1| chr3 12667005 12670366 +
1 domain prediction
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Lj3g3v0965840.1
n.a. PREDICTED: eukaryotic translation initiation factor 2 subunit 3-like isoform X2 [Cicer arietinum] gi|502089140|ref|XP_004488828.1| chr3 12847330 12851309 -
1 domain prediction
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Lj3g3v0965840.2
n.a. PREDICTED: eukaryotic translation initiation factor 2 subunit 3-like isoform X1 [Cicer arietinum] gi|502089135|ref|XP_004488827.1| chr3 12847330 12852288 -
1 domain prediction
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Lj3g3v0988820.1
n.a. PREDICTED: translation initiation factor IF-2, chloroplastic-like [Glycine max] gi|356525823|ref|XP_003531521.1| chr3 13311370 13320024 +
1 domain prediction
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Lj3g3v2315550.1
n.a. Elongation factor EF-2 [Medicago truncatula] gi|357451821|ref|XP_003596187.1| chr3 28433062 28438042 -
1 domain prediction
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Lj3g3v2316610.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356525774|ref|XP_003531498.1| chr3 28482403 28485647 -
1 domain prediction
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Lj3g3v2316620.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356556977|ref|XP_003546795.1| chr3 28483867 28486201 -
1 domain prediction
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Lj4g3v1425330.1
n.a. PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max] gi|356513781|ref|XP_003525588.1| chr4 22186873 22189124 +
1 domain prediction
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Lj4g3v1971930.1
n.a. PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Cicer arietinum] gi|502151359|ref|XP_004508402.1| chr4 27386497 27391330 -
1 domain prediction
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Lj4g3v2628800.1
n.a. PREDICTED: HBS1-like protein-like [Glycine max] gi|356528366|ref|XP_003532775.1| chr4 35798039 35804862 +
1 domain prediction
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Lj4g3v2628800.2
n.a. PREDICTED: HBS1-like protein-like [Glycine max] gi|356512557|ref|XP_003524985.1| chr4 35798039 35804862 +
1 domain prediction
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Lj4g3v3114310.1
n.a. PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like [Glycine max] gi|356527880|ref|XP_003532534.1| chr4 41964215 41967010 -
1 domain prediction
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Lj4g3v3114320.1
n.a. PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit-like isoform X1 [Cicer arietinum] gi|502163073|ref|XP_004512716.1| chr4 41966749 41968159 -
1 domain prediction
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Lj4g3v3114330.1
n.a. PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like [Glycine max] gi|356513002|ref|XP_003525203.1| chr4 41967177 41970306 -
1 domain prediction
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Lj5g3v0890580.1
n.a. PREDICTED: GTP-binding protein TypA/BipA homolog [Glycine max] gi|356500497|ref|XP_003519068.1| chr5 13167757 13175554 -
1 domain prediction
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Lj5g3v1699430.1
n.a. PREDICTED: elongation factor 1-alpha-like isoform 1 [Glycine max] gi|356558807|ref|XP_003547694.1| chr5 24693836 24695740 -
1 domain prediction
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Lj5g3v1953000.1
n.a. PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 5B-like [Cicer arietinum] gi|502119038|ref|XP_004496483.1| chr5 27580042 27590245 +
1 domain prediction
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Lj6g3v1887770.1
n.a. PREDICTED: elongation factor Tu, mitochondrial-like [Cucumis sativus] gi|449436569|ref|XP_004136065.1| chr6 20955588 20958018 -
1 domain prediction
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Lj6g3v1887830.1
n.a. PREDICTED: eukaryotic translation initiation factor 2 subunit 3 [Glycine max] gi|356525780|ref|XP_003531501.1| chr6 20984753 20987415 -
1 domain prediction
 –