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Lj6g3v1915990.1

Overview

Field Value
Gene ID Lj6g3v1915990
Transcript ID Lj6g3v1915990.1
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description Pyrimidine-specific ribonucleoside hydrolase rihA [Medicago truncatula] gi|357447543|ref|XP_003594047.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.90.245.10
1 291 291 5.30E-49
IPR001910
SUPERFAMILY
SSF53590
46 291 246 9.81E-42
IPR001910
Pfam
PF01156
76 283 208 2.30E-24
IPR001910
PANTHER
PTHR12304
383 488 106 5.10E-131
IPR023186
PANTHER
PTHR12304:SF6
383 488 106 5.10E-131 –
Gene3D
G3DSA:3.90.245.10
408 592 185 4.60E-23
IPR001910
SUPERFAMILY
SSF53590
416 591 176 6.41E-20
IPR001910
Pfam
PF01156
416 593 178 5.70E-20
IPR001910
PANTHER
PTHR12304
505 532 28 5.10E-131
IPR023186
PANTHER
PTHR12304:SF6
505 532 28 5.10E-131 –
PANTHER
PTHR12304
548 597 50 5.10E-131
IPR023186
PANTHER
PTHR12304:SF6
548 597 50 5.10E-131 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 76

Expression data

Expression pattern

Expression pattern of Lj6g3v1915990.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1915990.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.