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Lj6g3v1916130.1

Overview

Field Value
Gene ID Lj6g3v1916130
Transcript ID Lj6g3v1916130.1
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24078:SF224
10 678 669 0 –
PANTHER
PTHR24078
10 678 669 0 –
SUPERFAMILY
SSF46565
64 132 69 9.42E-21
IPR001623
Gene3D
G3DSA:1.10.287.110
64 136 73 1.70E-20
IPR001623
SMART
SM00271
66 123 58 5.30E-21
IPR001623
Pfam
PF00226
67 128 62 9.80E-20
IPR001623
ProSiteProfiles
PS50076
67 131 65 15.991
IPR001623
CDD
cd06257
67 120 54 4.80E-17
IPR001623
PRINTS
PR00625
69 87 19 1.60E-10
IPR001623
PRINTS
PR00625
87 102 16 1.60E-10
IPR001623
PRINTS
PR00625
103 123 21 1.60E-10
IPR001623
MobiDBLite
mobidb-lite
165 187 23 – –
MobiDBLite
mobidb-lite
276 434 159 – –
Pfam
PF11926
452 657 206 7.00E-77
IPR024593
MobiDBLite
mobidb-lite
691 719 29 – –
Pfam
PF11926
748 954 207 1.30E-61
IPR024593
PANTHER
PTHR24078
752 825 74 0 –
PANTHER
PTHR24078:SF224
752 825 74 0 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj6g3v1916130.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1916130.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.