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Lj6g3v1947600.1

Overview

Field Value
Gene ID Lj6g3v1947600
Transcript ID Lj6g3v1947600.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: inositol transporter 1-like [Cicer arietinum] gi|502135153|ref|XP_004502238.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 30 30 – –
PANTHER
PTHR24064
19 120 102 4.80E-59 –
PANTHER
PTHR24064:SF113
19 120 102 4.80E-59 –
Gene3D
G3DSA:1.20.1250.20
22 120 99 2.30E-05 –
SUPERFAMILY
SSF103473
25 120 96 9.81E-14
IPR020846
Phobius
TRANSMEMBRANE
31 60 30 – –
TMHMM
TMhelix
31 53 23 – –
ProSiteProfiles
PS50850
35 120 86 18.758
IPR020846
CDD
cd06174
36 120 85 3.03E-07
IPR020846
Pfam
PF00083
36 120 85 1.90E-15
IPR005828
Phobius
CYTOPLASMIC_DOMAIN
61 71 11 – –
Phobius
TRANSMEMBRANE
72 95 24 – –
TMHMM
TMhelix
73 95 23 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
96 120 25 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of
GO:0022857
Molecular function Transmembrane transporter activity Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
Subterm of
GO:0055085
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj6g3v1947600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1947600.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.